Csp010342.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000007.1:24345-26828[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00058 0.063 14.2 2.3 1 20 170 189 170 192 0.96 2 13 0.00035 0.038 14.9 1.4 1 23 198 221 198 221 0.93 3 13 3.2e-06 0.00035 21.3 0.8 1 23 227 249 227 249 0.98 4 13 2.3e-05 0.0026 18.6 0.6 1 23 379 401 379 401 0.97 5 13 0.0006 0.065 14.1 0.2 2 21 411 430 410 431 0.93 6 13 0.00027 0.03 15.2 2.6 1 20 451 470 451 473 0.92 7 13 0.072 7.9 7.6 0.4 1 23 478 501 478 501 0.95 8 13 8.2e-06 0.0009 20.0 0.2 1 23 507 529 507 529 0.97 9 13 0.00011 0.013 16.4 4.2 1 23 536 558 536 558 0.99 10 13 0.00032 0.035 15.0 0.4 3 23 566 586 564 586 0.97 11 13 0.00036 0.04 14.8 0.2 1 23 592 615 592 615 0.96 12 13 0.58 63 4.7 0.1 1 23 629 651 629 651 0.92 13 13 0.68 75 4.5 0.0 2 23 805 826 804 826 0.95
Sequence Information
- Coding Sequence
- atgGAATCATCGGATAATGAGCAGTACGTAAGGTACTCGTTGTCATCTGTTCATGACATTCAGCAGTCAATAATATCTCATGAGGAAGTGTGTGAGCCAGAGGAGTTGGTTATCTCTTCTGAGGTTAAAACGACATCAGCGAGAATTATCTGTGAGAACACCTCCTCGGACGACGAGAGCTCTGTTGTCTATCCAATTTATATAAAGCAAGAGGAAACACCGCAGTATACATCTGGCGATGATGAGTCAATGGCAGTTGAGGCACTCCGTCAATTGGGTGGAATGTATCCTTCGGCTAACTTTAACGAGAAAAAAACCACCAATTATGAAGAAAACCAATTAAAGTCATTGAAAAACTCGGAGATGGAGTACAATAATCTCTACACCGTTAAAAATCAAAGTTCCATTGATAAAGATTCTGCAAACAACACTCTGGAGGAGAGAATTTGCTCTGTAGATAGTGAATCAGGATTGGAGGCTCAttcgattaataaaaattttattaaattttcttgttCCACTTgtggtgaaaaatttgaaagaaaattggaTCTGAATAATCACATGGTGTGCCATCAGGTAGATCGTCCTCATGCCTGCAGAACTTGTGGCAATCTTTTTCGTTCTAAATCAAGCCTACAGGCTCACATGTCCCAGGTTCATAATCAAGAGAAATCTCACAAGTGTTCGATATGTGGTGCAGATTTCCAAAGaccatcatcattatcaaatCATATGAAGATTCACACGTATGTAGCAGGCAGAGCATTAATGTCACAATCGGCCAATAAATTATCAACCGAATCTCCCACATCTTCATCAGCAGGCCAAACTGTTGTTCACAATTATCAATTGGCGGGACAGATTAATTGGCAAAGTTATGCCTTGTCAAGTGATAACAACACTCTGGCTCACGAGAAATTAGATCTCCAGGAATTTACAGTGCTAGAAAATGGTGAGATGGCCCAATTTGAGTATCCTCAGTCTACAATCTACAatctcaatttcaataatttcacaaaTTCGGATACTCATATTGTTAAAGTTGAGACTCTACCATTTGAGGAGAGAAAAGGAGGACAGCAGCATGATTTTGTAACGGTGGAAGTTGAACAAAATTCAACATCACACCAGTTTATTTGCACACACTGtggcatgaatttttccagagCAACTGCTCTGGCCtcccatgaaaaaattcacaatgcAAAATTATGGTCAATGCCAATAGAGTGTGAATACTGTGACAAACAATTTCAGGATAGTAATTATCTCGCTTCTCATCAAACTACTTGCGCCAAAAAACTCATGCTCAGTAATGGTAACAATCCCAATGGTAAATGGTCCAAACACGCTTGCTCTGAATGTGGTAAAAAATTTACGACAAAGCAAAAAATGTTTAGACACCAGTGGATTCATCGCAAAAAGACTCATTCTTGTGAGGTATGTGGTGGTCAATATGAGAAACAGAATCAACTGGATGAGCACAGATTATCAGCACATCCAGGTGTATCACCATTTACTTGTTCAGAGTGTGGCAAGAGTTTTGTATCAAGACAGGGTTTATGGGAACATTCGAGAGCACACGGAGGGAGCCCAGTACATTTTCAGTGTGACACTTGTTCCAAAACATTTTCCTCGAGACAGGGATATTTGATACACCATAGAACACACACTGGAGAACGACCCTATGGTTGTAAATTTTGCTGGAAGGCTTTTCGTGATGGTGGAACATTGAGAAAGCACGAGAGAATTCATACAGGTGAAAGACCACATGTTTGTCCACTGTGCTCAAGAGCATTCAATCAAAAAGTTGTGCTAAGGGAGCACGTTCGGTGGGTTCATGCTGCTGGTAAAAATGATACTGAAGTTATTGGGCCACCATTTCCCTGTCCTCTATGTGGAGCTCTCAATCAAGACAGGGATGAGCTATGTGCACATATTGTTAAACACTCAGATCAAATGATTGCTGAGGCAAAGGCAAAAAATAGCAATATAGATTCTTTGAGTATCAAGAGTGTTGAGAAAAAGTGCAAGGTGGGAAGGGGAAAAAAGAGTCAAAAGATGCAGATGATTGATCAAGGGCAGGGACAGCATTTGATACAGGGAATTAATGGAGAaacaattgtttttgtttCAACTGATGGAGTAagggttggggggggggaggaggaggaggaggaggaggaggagaagaaaGAGGAGGAgcaagaggataaaaaaaaacaagttattgttgaaaatataaatGCTTTGAGGGTTCagtttattgatgataaagagGATAGCACGTTGAAAATTATTAGTAAGGAAAATGAAACCCTGCCTGAAGCTGAAGAGTTTGGTGAAGAAATTGAGACAATTGATGAGGGAATTTATCAGGAGAGCCaggatgaaagaaaaatggaacTCATCTGTGGCATATGTGGAGATGAATTtgaagataaaaatattctcatggATCATgttaaaattcatatttaa
- Protein Sequence
- MESSDNEQYVRYSLSSVHDIQQSIISHEEVCEPEELVISSEVKTTSARIICENTSSDDESSVVYPIYIKQEETPQYTSGDDESMAVEALRQLGGMYPSANFNEKKTTNYEENQLKSLKNSEMEYNNLYTVKNQSSIDKDSANNTLEERICSVDSESGLEAHSINKNFIKFSCSTCGEKFERKLDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQAHMSQVHNQEKSHKCSICGADFQRPSSLSNHMKIHTYVAGRALMSQSANKLSTESPTSSSAGQTVVHNYQLAGQINWQSYALSSDNNTLAHEKLDLQEFTVLENGEMAQFEYPQSTIYNLNFNNFTNSDTHIVKVETLPFEERKGGQQHDFVTVEVEQNSTSHQFICTHCGMNFSRATALASHEKIHNAKLWSMPIECEYCDKQFQDSNYLASHQTTCAKKLMLSNGNNPNGKWSKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGGQYEKQNQLDEHRLSAHPGVSPFTCSECGKSFVSRQGLWEHSRAHGGSPVHFQCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNDTEVIGPPFPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKNSNIDSLSIKSVEKKCKVGRGKKSQKMQMIDQGQGQHLIQGINGETIVFVSTDGVRVGGGEEEEEEEEEKKEEEQEDKKKQVIVENINALRVQFIDDKEDSTLKIISKENETLPEAEEFGEEIETIDEGIYQESQDERKMELICGICGDEFEDKNILMDHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -