Csp013548.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- KRBA2
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000009.1:6675174-6676991[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.2e-06 0.00067 20.4 3.4 2 23 237 258 236 258 0.97 2 13 1.5e-06 0.00016 22.3 2.1 1 23 264 286 264 286 0.98 3 13 0.0054 0.59 11.1 0.6 2 23 292 314 291 314 0.92 4 13 7.9e-07 8.7e-05 23.2 1.1 1 23 326 348 326 348 0.98 5 13 9.8e-08 1.1e-05 26.0 1.3 1 23 354 376 354 376 0.97 6 13 3.2e-05 0.0035 18.1 1.2 1 23 382 404 382 404 0.96 7 13 0.0025 0.27 12.2 0.4 1 23 410 432 410 432 0.99 8 13 3.6e-05 0.0039 18.0 0.2 3 23 440 461 438 461 0.94 9 13 1.2e-05 0.0013 19.5 1.3 1 23 467 489 467 489 0.98 10 13 7.6e-05 0.0084 17.0 4.7 1 23 495 517 495 517 0.98 11 13 5.1e-06 0.00056 20.7 0.3 1 23 523 546 523 546 0.96 12 13 4.8e-05 0.0053 17.6 3.9 1 23 552 574 552 574 0.97 13 13 3.9e-06 0.00042 21.0 5.4 1 23 580 602 580 602 0.98
Sequence Information
- Coding Sequence
- ATGAACGATATGAATCTAGAACAGAAAGAAGAATCTACTGATATCCAGCCAAAAACTTCACAAAAGATTTcggaaatcaataaaaaagcTGAACTTTACGTGATCGACCTTCGAAATGATCTCGACAATAACGAAGAGAATTCATATAGATATTTCCTAGTGTACAGAGAAGAATACTCTACATATATTGTACTGAAACCACTGAGACtgaataatgaggaagaaataGCAGAAAATCTCATAGATATTTTCTCTATGATAGGATCTCCAgccataattaattatccaagTGATGAGAATCATCGCGAAAAACTATCAAGAATACTAGAGAGCTATGATACACCAATATTAAACGTTAAACCAGAGCCAAATGTCAACAAAAATGATTCTTCcctttttaaaaataatttgaaagaGCAATTGTTGCACTGGATGAGAGAAAATCCCGAAAAACCTATACTGATTGGTCTGAAACATCTCCAAATAACtgaaaacaataaattgaattcattaacaaataaaaCTCCGATGGAACTACTATTCACAGAATTAACAACTCTAAATCGTCAAACTCCTATCAAACAAGAAAATCCTCCAAAATCTGTCGAGAATAGCgttataaaaatagaaaaagactTGAAATCACCCAAAAGACGTACAAACCCTAGACAATCATCAAAGCCCTCACCACCCACACTCTCCCCCCTGTCCTGCCCCCATTGTCATCAAGTATTCACCTTTCCAAGTGTTTTAAAACGTCACCTCCGATCTCACACAAATGAACGTCCCTACACCTGTGAAATCTGCAACAAAACATTCAAACAATTAGGTCACCTAAGTCAGCATACTCTGATCCATGAATTCCAGTCATCCCAATGCACAATCTGCAATAGAAAATTCGAAACTCTCGATATCCTGAAATCTCATTTATCAGAAAACCATAAAAATAAACAGGGGAAAGTGATCAAGTCGATATTTCAATGTGACAAttgtaagaaaatttttacaacTAAAAGTGTTTTAGAACGACACATCTTGAGTCATACTCATGAGCGTCAGTTTGATTGTAAAATCTGTGGTAAAAGATTTAAGCAAGCAGGACATCTCAAGTCTCATATATTAGTTCACACTGGAGAGAGGAAATTTGCGTGTTTAATATGTTCTAAACGTTTTAGCCTTTCAAATAGTTTAAAGAAACATATGTACATTCATAATGGAGAGAAGCCTTATCAGTGTGACGTGTGTGGATCTAGATTCCTCGAGAGAAGAAACTTGAATGGTCATTTGATGACACACACTAATGAAAGACCTTTTGGTTGCAAAATATGTGGTAAACGTTACACTTTGGCGGATACTTTGAGGAGACACATTAGCGCTGCTCATGAGAATGGAAGGACTTATCAGTGTGAGATTTGTGCCAAAATGTTCAAACAATTGGCGCATCTCTCTGTTCATAAGAAAGTACATACTGATGAACGACCCTTTCAGTGTCATCTTTGTGATAAAAACTTTAAGCATAAGAATGTACTCAAGAGCCATTTGGCTATTCATGCCAATGTCAGACCTTTTGAGTGCGATAATTGTAAGGCTACGTTTGTCAGGAAGACCAATTTACAGACGCATATTGCGTCCGCGCATATGAACGAGCGACCGTATTGTTGTAAAATTTGTAATAAAAGATTCAAACAAATTAGTCACTTGAATGGACATGTTATTGTGCATAGTAATTCTATGCCTTTTCAGTGTGATTATTGTGAGAGAAGGTGTAATAGACGGGATAACTTGAAGAAGCATATGAAACTGCATGAAAAGAAATAG
- Protein Sequence
- MNDMNLEQKEESTDIQPKTSQKISEINKKAELYVIDLRNDLDNNEENSYRYFLVYREEYSTYIVLKPLRLNNEEEIAENLIDIFSMIGSPAIINYPSDENHREKLSRILESYDTPILNVKPEPNVNKNDSSLFKNNLKEQLLHWMRENPEKPILIGLKHLQITENNKLNSLTNKTPMELLFTELTTLNRQTPIKQENPPKSVENSVIKIEKDLKSPKRRTNPRQSSKPSPPTLSPLSCPHCHQVFTFPSVLKRHLRSHTNERPYTCEICNKTFKQLGHLSQHTLIHEFQSSQCTICNRKFETLDILKSHLSENHKNKQGKVIKSIFQCDNCKKIFTTKSVLERHILSHTHERQFDCKICGKRFKQAGHLKSHILVHTGERKFACLICSKRFSLSNSLKKHMYIHNGEKPYQCDVCGSRFLERRNLNGHLMTHTNERPFGCKICGKRYTLADTLRRHISAAHENGRTYQCEICAKMFKQLAHLSVHKKVHTDERPFQCHLCDKNFKHKNVLKSHLAIHANVRPFECDNCKATFVRKTNLQTHIASAHMNERPYCCKICNKRFKQISHLNGHVIVHSNSMPFQCDYCERRCNRRDNLKKHMKLHEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -