Csp020951.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000027.1:136903-140001[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.3 4.7e+02 2.0 1.7 2 23 69 91 68 91 0.89 2 17 0.00029 0.032 15.1 0.9 1 23 111 134 111 134 0.96 3 17 2.7e-05 0.0029 18.4 2.3 1 23 140 163 140 163 0.97 4 17 3.5e-05 0.0038 18.0 3.3 2 23 169 191 168 191 0.95 5 17 5e-05 0.0054 17.5 3.4 1 23 196 219 196 219 0.97 6 17 2.2e-07 2.4e-05 24.9 0.9 2 23 226 247 225 247 0.97 7 17 1.2e-06 0.00013 22.6 1.5 1 23 253 275 253 275 0.97 8 17 1.4e-06 0.00016 22.4 0.2 1 23 281 303 281 303 0.98 9 17 0.0008 0.088 13.7 0.1 2 23 591 613 590 613 0.91 10 17 0.41 45 5.2 0.3 1 23 625 648 625 648 0.95 11 17 0.0045 0.49 11.4 3.7 1 23 661 684 661 684 0.94 12 17 0.00016 0.018 15.9 5.8 1 23 690 712 690 713 0.95 13 17 0.03 3.3 8.8 0.5 3 23 720 741 718 741 0.94 14 17 0.00085 0.093 13.7 0.2 1 23 746 769 746 769 0.97 15 17 3.6e-07 4e-05 24.3 0.4 2 23 776 797 775 797 0.96 16 17 1.2e-06 0.00013 22.7 0.3 1 23 803 825 803 825 0.96 17 17 4e-05 0.0043 17.8 1.0 1 23 831 853 831 853 0.98
Sequence Information
- Coding Sequence
- ATGCTCGACACAGTGACGCAGAAAAGGATACGAAGAAAAATAAGTCAGCCAAAAGATATTCCACCAAAGAAGAGATCTGAGCCATTGAAGAGATTACCAGCAGTGAGCACCTCTGAGAAATCTAAAATTTCTTCTCGACCGCGAAAATCCCTCAAAAAATCCCCTCAAAGTCCTAAACCTAAAGTGAACATTCCAGATCTCCTCTCCTGTGAATTCTGTGATTTCAAGTGCAACGACAAGTTAACAATATCCGCTCATCTCTTAGACAAGCACGCAGACGATGAATTCATCCCAAAGAAACTAGGAACACGGATCGAGGGTACCAAAAAATTTACCTGCAACGTGTGTGGAATGATATGCGCTCAGAGAGAGACACTCAACGCTCATTATATCCGAAAGCACACGGAAAAATACGAATTCAACTGTGACAagtgtgataaaaaatttaaaataaaggGTGACCTAACAACTCACTTGAAAAGAACACACAGTGAGGATCCAGTTGTCTGTCACGTTTGTGGAAAATCCTATAGAGATAAACACTCCCTTTATCTCCACCAAAAGTATTCCCACTACAAAGGTAAATATCCTTGTGAAAAGTGTGGAAAGTGTCTCACaactgaagaaaatttatCTCATCATCTCAAGAATCAGCACGAGCAGAGGGAACGTAAGATGTGTGAAGAATGTGGAAAGACCTTTGCATCAGTCTTTGATCTGAAAAAACATATGAGAACTCATACGGGTGAGAAACCCTATGCTTGCAAAGTTTGTGATAAAAGTTTCAGTAGACACTCTGGACTGAACCAGCACCTTCTTTTGCACACTGGTGAAAAACTTTATGTTTGTGACGTTTGTGGAAGGAGTTTTGCACAAAAATCTGGACTCATTGGACATAGAAAAAAACACAAAGGAGATTTACCTCCTCTACCTCATGTTCAAATTGATCATATTGTCAAattatCACAGAAAACGCGAGAAGATCATGATCATAATCACGGCCTTTTCATCTTCGATCGAGAGTCCGTGGTAATGCGAAAATGGCAGATTTTGGAGTTTGATGGAAAGCCCTACTATGCATTTGTGCCTGAGAATGAAGAGCCACTGGACCTCGAAGAGATCCCCAGTCTCGATGATACTGAAGAGGAGGAGACAACCCCCCACAAAACTAAGCCAAAACAAGAGGTTCTAGGGGAGGAAGATGAAACCCTTGAGAATGACGAGAGTTTTTACAATTACCAAATGTCATCTCCAGAGCCTCACGATGAGCCTGACGATTCTCCCCAAGACATTAAACCCATTCTCCTCAATGGAATCAAGGATTCAGAAAAAGCAGACAAAGGAGACTTGTACCAGGTGAAGATGGAGGGTAGTATAATCACAGTGGAAATGTTGGCTGAGAATGTTCAAGCCCTTAATTCTGGTGAGTCAATCCTCCCAGAGCTTGAAGAGGACCAACCAGCTGATAGAGAACCCTCTCAAGATCCTGATGACCCCGAGAAACATGATGATGGGAGCCATCAACAACATGAAGAGGAAAATGAAGAGCAAGCTCAAGAGGTCCCCACGTACGAAGAGAAACACCAACATTTGGAGgcaattgaattcattggaGTGGACCGTGAGGATGATAGTGAGGATGAAGAACACGTTGACGAAGTTGAGCCAATTGCTGAGAAATCAAAATCCTCTCCACAATCCTCACCAACCCATAATAACCAAAGAAAGACTAGGTATAGACAATTGTTACCCACCACCACAGCTACACTAAAATGTAAAGTGTGTGGAGAGACCTTTGGTTCTGCAATAGCCTTCAGAAAGCACGTGGCATGGACTCATAAGAAGAAAGTCTGTATTCAGGAGGATGGAGCTTACATCTGTGCCGTATGTGACTACAGAACCCTCAAAAAGAGTCTATTTGCTGCCCATTTGGAGAGAAAACACGAGACCTGGCCGAGAAAGGGTCAGAGTAATCTTGTCTTCCCATGTGCTGTTTGTGGATTTGTCTGCAGATCTAAACACTCTCTTCAGTCTCATTTTATCAGGAAGCACACAGATAAATACGAACACCAGTGTAAATTCTGCCCTAAAAAATTTAAGGTAAAGGGAGATTTGACGAATCACGTGAGATTCCATCATAAGGAGAAACCAATTAATTGTGATGTCTGTGGTAAACTGTGCCAAAACACTGGATCTCTGTATGTTCATCAGAAGTGGGCGCATTATAAACCCAAGTTTGAGTGTCCAATATGTAGAAGGAGAATGGTAACTCAGGAGAATCTTGATCAACACATGGTGACGCAGCACGAGAAGAGGGAGAAGATTGTTTGTGCAGAGTGTGGCAAGACATTTACAAAGAAGGATTCATTCAAGAGGCACATGGCTGTTCACACTGGCAGTAAGCCTCATGCCTGTCCCATTTGTTCCAAGCCTTTTGCCAGACAATCACAACTGCGACAACACGTGTTAATTCATACGGGAAAGAGGCCATTTGTGTGCGATATCTGTGGTAAGGCGTTTACACAGAAGCCTGGATTGATTTGTCACCGAAAAACACATCCTGGACCTCATCCACCTCTCCCTGTCATGCCAATTGCGGATCTAGTTAATGAATTTACTGCTGAATATCTACAAGAGTCTGTCAATGCAGcacatgatgatgatgaggaggaggaggaggaggaggaggaggaagacGAGGAAATTGAGCCAGAGGAGGAAGAGGAAGTTGAACAGATCGAGGAAAtcagtgaataa
- Protein Sequence
- MLDTVTQKRIRRKISQPKDIPPKKRSEPLKRLPAVSTSEKSKISSRPRKSLKKSPQSPKPKVNIPDLLSCEFCDFKCNDKLTISAHLLDKHADDEFIPKKLGTRIEGTKKFTCNVCGMICAQRETLNAHYIRKHTEKYEFNCDKCDKKFKIKGDLTTHLKRTHSEDPVVCHVCGKSYRDKHSLYLHQKYSHYKGKYPCEKCGKCLTTEENLSHHLKNQHEQRERKMCEECGKTFASVFDLKKHMRTHTGEKPYACKVCDKSFSRHSGLNQHLLLHTGEKLYVCDVCGRSFAQKSGLIGHRKKHKGDLPPLPHVQIDHIVKLSQKTREDHDHNHGLFIFDRESVVMRKWQILEFDGKPYYAFVPENEEPLDLEEIPSLDDTEEEETTPHKTKPKQEVLGEEDETLENDESFYNYQMSSPEPHDEPDDSPQDIKPILLNGIKDSEKADKGDLYQVKMEGSIITVEMLAENVQALNSGESILPELEEDQPADREPSQDPDDPEKHDDGSHQQHEEENEEQAQEVPTYEEKHQHLEAIEFIGVDREDDSEDEEHVDEVEPIAEKSKSSPQSSPTHNNQRKTRYRQLLPTTTATLKCKVCGETFGSAIAFRKHVAWTHKKKVCIQEDGAYICAVCDYRTLKKSLFAAHLERKHETWPRKGQSNLVFPCAVCGFVCRSKHSLQSHFIRKHTDKYEHQCKFCPKKFKVKGDLTNHVRFHHKEKPINCDVCGKLCQNTGSLYVHQKWAHYKPKFECPICRRRMVTQENLDQHMVTQHEKREKIVCAECGKTFTKKDSFKRHMAVHTGSKPHACPICSKPFARQSQLRQHVLIHTGKRPFVCDICGKAFTQKPGLICHRKTHPGPHPPLPVMPIADLVNEFTAEYLQESVNAAHDDDEEEEEEEEEEDEEIEPEEEEEVEQIEEISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -