Csp003548.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- br
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000002.1:2068023-2070195[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.003 3.3 7.9 0.0 4 42 203 241 200 243 0.69 2 5 9.2e-12 1e-08 35.2 0.0 5 39 254 287 252 291 0.90 3 5 0.011 12 6.1 0.0 18 34 318 334 307 340 0.77 4 5 1.9 2.1e+03 -1.1 0.0 32 45 349 363 348 363 0.91 5 5 1.3e-11 1.4e-08 34.7 0.3 4 38 365 399 362 405 0.90
Sequence Information
- Coding Sequence
- ATGTCTGAACCATCTGAACTATCGAGTCAACATCAAATTGACcagaatttttgtttcaaatgGAGCAATTATCACAATCATCTGTTGTCAGTAGTCAGAGAGTTGTTGGAGGAGGATTTCATGGTAGATGTGACGCTATCTGTTGCTGGAGAACGTATCCATGCACATCGAATTGTATTATCTGCCTGCAGTACTCTATTTCAAGAAATTTTGAGCGAAACAAAGGAGGATCATCCTACGATTATTATCAGTGACATATCACCACAGGATGTGAGGTCTATTGTGGAATTTTCGTATCACGGAGAAGTTAGAATACCTGTGGAAAATATATCGAATTTATTAGACGCTGCTCAATTGTTGAGGATTAGTGGATTGATGGAGATTGAAGGACTCGATGAGAATGACTCGATAATAAGTAAAGAGCTGACTGAAGAGATTGAAGAGCCTGAGGATTCATCAGAGCACGATGAGGGCGAGATTTTGGATGCAATAGAACAAGACAGTGAGTTATACGAGAGTGTTGAGCTCAATGAAGATGATTCTGTGACAATCAAGaagaaggaaaagaaaaagagagaacaTCTGAAGAGGGAGTACAGTGACGCTCAGTTGGAGGCAGCCATAAGTGacttgaaaaatggaaaaacattgattgaaGCTTCTCTTCAGAATCATATACCCAGATCGACACTTTACATGAGGGCTAAGTCACTTGGTATTCAGTTACATGCTTCTAGGAATGAATATCCTGTAGAGTGTATGAAGTCTGCTATTGAGACTGTCGTTAATGGTTCAAGTCTTCAACATGCAGCTGAAATGTACGGTATACCAAAGACAGTTCTTTGGAGGCGAATACAAAAAGAGGGATATCGAATAATTAGACCAGACACGAGAAGATCGTATGCATCTGATAGACGAGAGTCTGCTATCAAAGCACTCGAGAGAGGAGAAACTCTTACAAAAGTGGCACAAGAGTTTAAAATACCCAAAACAACATTATTCAGGGACAAAGTGAGACTCGTTGATGCTGGAAAATTGCCAGAGACATTCTGGAAGAAACGAAAAACCGGAGACGAGGACTTGAAAAGATCTAGACTTGAGCAAGCAGTTGCAGCTTGCAAAGATGGTAAAATGTCACAAGCAGCAGCAGCTACAGCCTACAGTATTCCAAAGACCACAATCTGGAGGAAATTGCAACAGGCGAGTAAAAAGAGTGAGGATAGTCCAACTCCAAGGGCCTCTAAGCGACGAAAAAGGGATAACAATGGATCTCGAATTAAATCTGATATTGCTGATGATGAATTCGCTCTCTGTGAAgTAGGCTCAGAGATCCCCATAACGTACATCGACGAAGACAGTATACCCCAGGACTCAGTGATAATCCTAACAACAGAAGACGTCGACAGTCTCAATCTAGAGGAAAATAGTCAAATAATTGTCAATGCAGATTCTGGTCAAGAGTATGTACCAGTTACAATAAGCATCGATCAAATGCACGAAAATACAGCAGAGAGTTGA
- Protein Sequence
- MSEPSELSSQHQIDQNFCFKWSNYHNHLLSVVRELLEEDFMVDVTLSVAGERIHAHRIVLSACSTLFQEILSETKEDHPTIIISDISPQDVRSIVEFSYHGEVRIPVENISNLLDAAQLLRISGLMEIEGLDENDSIISKELTEEIEEPEDSSEHDEGEILDAIEQDSELYESVELNEDDSVTIKKKEKKKREHLKREYSDAQLEAAISDLKNGKTLIEASLQNHIPRSTLYMRAKSLGIQLHASRNEYPVECMKSAIETVVNGSSLQHAAEMYGIPKTVLWRRIQKEGYRIIRPDTRRSYASDRRESAIKALERGETLTKVAQEFKIPKTTLFRDKVRLVDAGKLPETFWKKRKTGDEDLKRSRLEQAVAACKDGKMSQAAAATAYSIPKTTIWRKLQQASKKSEDSPTPRASKRRKRDNNGSRIKSDIADDEFALCEVGSEIPITYIDEDSIPQDSVIILTTEDVDSLNLEENSQIIVNADSGQEYVPVTISIDQMHENTAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351245;
- 90% Identity
- iTF_00351245;
- 80% Identity
- iTF_00351245;