Chom005694.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01002889.1:25230-30020[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0037 0.19 12.2 2.6 2 20 567 585 567 587 0.94 2 9 0.63 33 5.1 2.4 1 19 597 615 597 620 0.85 3 9 0.0056 0.29 11.6 5.2 2 23 626 647 625 647 0.96 4 9 0.00012 0.0064 16.8 0.9 1 23 658 680 658 680 0.96 5 9 0.00013 0.007 16.7 6.3 1 23 685 707 685 707 0.98 6 9 1.5e-05 0.00078 19.7 0.7 2 23 714 735 713 735 0.96 7 9 0.00061 0.032 14.6 0.6 2 23 741 762 740 762 0.97 8 9 4.9 2.6e+02 2.3 3.4 1 22 804 825 804 827 0.80 9 9 0.0092 0.48 10.9 4.0 1 23 833 856 833 857 0.97
Sequence Information
- Coding Sequence
- atgcGAATTTGTGGCttatgcaaaagaaaaaatatagcaaatggaagttattttaaaattccaaaagacATTGAAAGGCGAAAGATATGGAATGATGTATGTCGAATAGAATTTACACCAACCGCTCGACTATGCATGCACCACTTCATGTCGTCAGATATTATAAGTGCAGGAAGTCGATTCCTTCTAATGCCCACAGCTGTTCCGGTTATTCAAACAGCACAGGAAATTACAGACAAAAGATGTAATTTATTTTGTGCGTTGGGTTGCCCATCcggttataatatttataaatttcccaATCGATTGCATGATGAGGAGAGaagaaaatattggtttaatttttttgatatggAAGATCCAAATATTGATGACATCTATGCATGTGAAAGACATTTTTCTCGTAAGCAAAGAATTGAAAATGGCATACGTTTAGATGCAGTTCCAGATAAGCAccCTGAAAGTGTTTcagaaaatactttatttatacgtaaacaaaaaatgttaccaaTTACAACAATCTCACCTCCAAAATCTCAAGAACAAGAATCAGAACAAGATCCTTTGAACATTAAAGAACCTGTTAAAAATGAGGAACCGCACCAATCAGTTGAAACTTTGCAATTGCAAGAGCAACTTGAGTTACAAATACCTCTTATTCAACCGATACAATTCTCAAAGTGTACGCAAACAAATACCCGTCTCTGCGGCATAGTAGAAGTTTCCGACTTAGCAGATGATTATCGACTTAAATGTTTCTATTGCTGTGAGGTGTTTCCAAtagaaaagtggaaaaaatatcTGTCTCATTTAACTAGAAATCATGAAAACGAAGAAGCTTTTCGAATTGACAAATACGTTTCTAATGATCATGATTATACATCAGTTGGCTTCAATGGAAATTCACCAATAGAAAATGACAACACTCCTCTTTTACAGCCTCCCTCGTTTGCTACAGTTGTTATAGAACCGAATGCGCTGCTACCTCTTCTAGTTAAACCGCCAGTGATACCCTTTGAAACCGTTAACATAAGTTCTAATTATTATCccgaagaaaatgaaaatgaagaaaattgtgataaattacTTATGCCTGCTCCAGTTGCAAAACCCAACTTATCTTCCACGCCTTTTaccaaaaaactacaaaataaaaataaaaaaatgttcaatgcATCAACATCAACAAGAAATAAATCAAAGcaaaattccaATATAACTCCTTTAAGTCGATGTCTAAAAAGATCAAATACAATTGAATCGTTAGCATCTATCACATCAGAGGACACACCAaaagaagaaattgaaattcaacCACACCCAACACCACCCGCAGCAGCAACTACAGTTGAAAGCTTTGAACCAAAACCCACAGAGCTTGTTTTTGAATATGCTCCTAAAGATATTATGAACTTACTACTCGATAGCATGAAAAACTATCCAGTTTTATGGGAATTTGATGAACAACCCTTTAATGAAGACTATTATGAAGCAGTTGAAGAAATTTGTAAAGTAATCAATGATAAGTGgtcattaaaaatcgacaatTTAAAGATGCGTCGTAGTATTAATCGTATCTTaagattttattgttatttatatccATTGGAAAATGTGGAAAATATTAATGAGTTCACTAGCTATTATGATAAATTAGCATCTTTTATGCCTGAATCAATACATGATGTAGCCTATGCTCGCTGCTCCCATTGTTATAAATGTTTTCCAAATGATTACgagttaaaaaatcatttgttggAGGAACAAAACCACAATTTAGGCTGGCCTTTTAAGTGTGTATTGTGCAAGGAATGCTATACGGACAGCGATGACTATGAATTCCATAGAGGTTTGCAACACTACGAGGAAATATTACGTTGCAAATATTGTAACCGAACATTCTTTCAGCGAAATAAATACAATCATCATGTATCTGTGCATCAATTTGGTGAGGGCCTCCTGCCCGGTAAGCATGTATGTGATATATGTGGAAAAATATTTCCGACTAGTTCAAGACTGATGGGTCACAAAAAATATCACGGTGAAAAGAAACACAAGTGCCATTTGTGCTCCAAAAGTTTCTATGGTAATTCGTTACTAATGCGCCACTTAAAAAGGCATCGTAAcgaatttgatttaatatgCGAAGTGTGTGGCAAGGGATTCAACTATCACAATAATCTACGTGAACACATGAAAGGTCACACCGGCGCTAAGGTAACCTGCAATATATGCAATTTGAGATTAAGAAAATCCAGTTTAATTCGTCATCTGCGCACGGTACATGTGGCCTGTGAAGGTACTGTTGAATCAACGTATAGAGCACGAACACATCATTATAGGCAAATACTCAAACCAAAACCTAGACAACCTAGAAATAGACGTATAAAATCccttaataaaaagaaatatcatTGTAAAATATGTGATATACATTTCGATGGTCACCAGTCCATCGTAGAACATAACAAAGAATTTCACAATGATGGCACCCGCTACCAATGTAAAATATGTACATCAGATTTTggcaaaaaactaaatttaagagTACACTATCGACGTAGGCACCATTTACATGTTTATCAAGTTTACAAATTAGTgaatcatgatgatgatgttgaagcGGTTCTGTCAATTAAACAGGAAGAATTAGATAGATTAGCAGAAACTGTGGGCTACTCATTGTGTCCGCCAACAAAACCAACTACAACATCAACACCAGTAGATGATTGCAATAAAAGTCCTATCATAAAAGAGGATTGCACAACAGACGAAATCAGTTTTGGAGAGGAGCGTATGCATAGCGATATGATACAGGATGAAATAATGAAAGCCACCGACAATATAGTAATTTCTGGCAATATTAAGATCGATGACGATCAATATATGAATGATTTGTTAaagatgttataa
- Protein Sequence
- MRICGLCKRKNIANGSYFKIPKDIERRKIWNDVCRIEFTPTARLCMHHFMSSDIISAGSRFLLMPTAVPVIQTAQEITDKRCNLFCALGCPSGYNIYKFPNRLHDEERRKYWFNFFDMEDPNIDDIYACERHFSRKQRIENGIRLDAVPDKHPESVSENTLFIRKQKMLPITTISPPKSQEQESEQDPLNIKEPVKNEEPHQSVETLQLQEQLELQIPLIQPIQFSKCTQTNTRLCGIVEVSDLADDYRLKCFYCCEVFPIEKWKKYLSHLTRNHENEEAFRIDKYVSNDHDYTSVGFNGNSPIENDNTPLLQPPSFATVVIEPNALLPLLVKPPVIPFETVNISSNYYPEENENEENCDKLLMPAPVAKPNLSSTPFTKKLQNKNKKMFNASTSTRNKSKQNSNITPLSRCLKRSNTIESLASITSEDTPKEEIEIQPHPTPPAAATTVESFEPKPTELVFEYAPKDIMNLLLDSMKNYPVLWEFDEQPFNEDYYEAVEEICKVINDKWSLKIDNLKMRRSINRILRFYCYLYPLENVENINEFTSYYDKLASFMPESIHDVAYARCSHCYKCFPNDYELKNHLLEEQNHNLGWPFKCVLCKECYTDSDDYEFHRGLQHYEEILRCKYCNRTFFQRNKYNHHVSVHQFGEGLLPGKHVCDICGKIFPTSSRLMGHKKYHGEKKHKCHLCSKSFYGNSLLMRHLKRHRNEFDLICEVCGKGFNYHNNLREHMKGHTGAKVTCNICNLRLRKSSLIRHLRTVHVACEGTVESTYRARTHHYRQILKPKPRQPRNRRIKSLNKKKYHCKICDIHFDGHQSIVEHNKEFHNDGTRYQCKICTSDFGKKLNLRVHYRRRHHLHVYQVYKLVNHDDDVEAVLSIKQEELDRLAETVGYSLCPPTKPTTTSTPVDDCNKSPIIKEDCTTDEISFGEERMHSDMIQDEIMKATDNIVISGNIKIDDDQYMNDLLKML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00350221;
- 90% Identity
- iTF_00350221;
- 80% Identity
- iTF_00350221;