Chom003065.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01003180.1:1055269-1060794[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.013 0.66 10.5 0.4 1 23 384 407 384 407 0.93 2 11 7 3.6e+02 1.9 0.2 2 11 414 423 413 427 0.84 3 11 7.1e-06 0.00037 20.7 0.7 1 23 471 493 471 493 0.99 4 11 0.01 0.52 10.8 3.1 1 23 503 526 503 526 0.91 5 11 0.00029 0.015 15.7 1.3 2 23 533 555 532 555 0.95 6 11 0.033 1.7 9.2 0.4 1 20 584 603 584 605 0.93 7 11 0.0026 0.13 12.7 5.2 1 23 632 654 632 654 0.98 8 11 0.062 3.2 8.3 1.3 1 23 661 684 661 684 0.97 9 11 2.9e-05 0.0015 18.8 3.9 1 23 690 712 690 712 0.97 10 11 0.0078 0.41 11.1 2.0 2 23 718 742 717 742 0.95 11 11 0.0052 0.27 11.7 2.5 2 23 746 767 745 767 0.95
Sequence Information
- Coding Sequence
- ATGGATCAACTGGAACAATTGGAAGCATGTCGCATTTGTGTAACTTGTTTTCCTTTACAAGAAATggatttcattcatttatttcaacaaaatgaagaatttcaacaagagttaaattttatacaaaatgaaaTCACCCACTGGCAATTGAAAATCCAACCTGAGGATGGTTTGCCACAACGTATCTGTGCAAATTGTTTTGCCAAATTCTGCAGCATACAGGCATTTCGCAAAGAGTGTCAAAAAGCTCAAGAAGATCTAATTGAGACCGTGTTAATGCAACAAAATGAAGGAAATTCTGCATCAACTAACGTAGAGCCACAAAATGGGCAAATCAAAAATTCTGACAATCCCCTACCCTTAATGGGTAATTTTGAACCAACCAGTGTTGTCTTGAATGGCGATAATAATGTTTTAGTTTCATCGGTTAATTTAACACAATCGGATgtttctttaaatgattttcccGTCTTTGACCATCAACAATTTTCACATTTTGATAATCCCTCATTAATGGATGAGGCTTCCACGTTATTAGATGGTAGTAATTTAATTGCGGGCGAGACAACACAAGAATTAGGCTTTTTACCGTCACAAAACTTATTTACATTTGAGACTGCCGAACCACCCTCAACGGGTGCACTGCCATTAGTTGAGACTGATACTACGTCCATAATAAATGATATGCTCGATCATAAAtctaatgttgaagaaaatgaacaaaatataattataaaacatgAAGATCTCGATGAAATGTTAAAACACAGTAttataccaacaacaaaaaaattaactcaacaacaacaaaaacaaaatgaagaaattgttatgaaaaataataatgttttggATATAAAAATGGAACAGGAAACTAATAGTAAAAAAGGAGAAGGAAATCATTATAATAGTAATTATATTAAAGTGAGAAATGaCTCTCCCAATACCATTATAACTTTCGTTAATCGTGATGATTCCAATTCCGATTTGGAATGTGATGAAACCGATGTAAATACCCGTCTTAAGGGTCAGTCTTATGCTTGCCATTATTGCTTTTGTCCCGAAACAGGACCTATCGAACATCTCGTCTTCCCCAATGAAGATGCCCTCTCACAGCATTTTTTCGACATACATGATCCCAATCGTCCCTACACTTGCCCACAATGTCCGCAATCATATAAAACTCAATTGCTACGCGATAATCATGTTAGACTTCTACACAAAATCGTCGAATTACAAACGTGTAATTATTGTCAGAAACGTTTAAAAGGCTCCATAGATGTACATCAATATAATTGCCAGTATGTGGGTGATTGGGAGTGTGAACAGTGTAAGGAGAAATTTGAGCAAACACCTCTATATCGTTTTCGTTTGCATCAGCGACAACATGAGCGCATTACCACCAAACAATTCAAGTGTCGTTTGTGTGAACGTAATTTTGCGAAAAAAGCCAATTTGGAAGCACATCAAAGGATACATAAAGTGGAGGCACAAACAAATGCCACATATTGTTGCAATGTGTGTAAAGCCaCCTTTGTTGACGACTATGAGCTAAAACGTCATAAATATCAACAACACAATGCTGAACATCctcttaaatgtaaaatttgccTTAGAGGTTTTTCCTCGAAAGTATTTTTACAACGTCACATAAATCAATTTCATCCTGACCATAATCATAATAGCAATGACTcttcctccaccaccacaaccaCCACATCATCAGGTGCCACTTCGCCCACATATCAAcatgtttgtttaaattgtaatgTCGGCTTCAAAACCTTACAAAAGCTACAAAGTCATTTACTTTTGGGTCGTGATACCAATGGCAATTGCTTATATAGTACCAGCAATAAATTGGAACGTCGTAAGTTGCAACGTCAGGGAGTATTTCCCTGTTATCATTGTCCTCGACGTTTTCATTTACGCTCCCAACTcgacaaacatttaaatactcATGATGCTCGTTTGAGACCGTTCCAGTGTGAACAATGTATAACCCGATGTCGTTCGGCGTTTGAGCTGAAACAGCATGTGAATGTGGCCCATTTGAATATTAAGGCGTTCTCCTGCGATAAGTGTGGTAAATGTTTTGGTTATAAAAAGGATCTTAGAGATCATATGCTATTTCATGCGGaAATCAATGTCAAATGCACCGAAGAAGGTTGTGATTATGTGTGCAAAAACGAAAAGGCCTTAAATGATCATATACGTCACAAACATCGTTTATTATCTTGTGAATATTGTCACGAACAATTCACCCGACAAAAATTAACAGCACATTTACGTAAAATTCATCGTTCGGAAATTGATGTTGAATTGGCTTGCGAATCTGATAGTTATTATAAATCTCAAttacttaataataataatgatattacACAAATCTCGTTTAATTTACTTAATactcaacaaaaacaacaaacacagcaacaattgcaattaaataaaacaacaacaacaagcatAACATCTCCATCAATAACTTCATCATCATCTTTAATTGAAACCTCGTTAGCAGAGTCTCAACTACAAACTACAGCAGCATCATCAATAACATCTAACTCATCtacatcatcattattaacaacaattatTGCTTCATCTAGTGCtccaacatcatcatcaacaacaacatgtttAACTTCTGCTTCATCTTGTAATTTAGCAGGTACTAATTTAAGTTCTTGTAGTGTAGTTGAATCACATAATCATCTGATTAATGATGTTGAGCATCATGATCGGCAACAACCACAATCACAACAGCAAAACCATCATGACCAATTGCATAATATATTTGCCAATGATGTTCATGATGGTTCAAATGGTTCTAGTACATTGGCATTAAATGGCCTGGTCTCCTCTACTGATCATGTTAATGATGCTAATgatcatttaaatttagtaaGCAATGATGCCagcaatatatttttagtaccCTCAAATGCTTCAACCACGGCCAATGATAATCAATTAGATCAATACTTTATGGCCTCTTTAATGGATACGGAACAAGAGATAATTGTTACATag
- Protein Sequence
- MDQLEQLEACRICVTCFPLQEMDFIHLFQQNEEFQQELNFIQNEITHWQLKIQPEDGLPQRICANCFAKFCSIQAFRKECQKAQEDLIETVLMQQNEGNSASTNVEPQNGQIKNSDNPLPLMGNFEPTSVVLNGDNNVLVSSVNLTQSDVSLNDFPVFDHQQFSHFDNPSLMDEASTLLDGSNLIAGETTQELGFLPSQNLFTFETAEPPSTGALPLVETDTTSIINDMLDHKSNVEENEQNIIIKHEDLDEMLKHSIIPTTKKLTQQQQKQNEEIVMKNNNVLDIKMEQETNSKKGEGNHYNSNYIKVRNDSPNTIITFVNRDDSNSDLECDETDVNTRLKGQSYACHYCFCPETGPIEHLVFPNEDALSQHFFDIHDPNRPYTCPQCPQSYKTQLLRDNHVRLLHKIVELQTCNYCQKRLKGSIDVHQYNCQYVGDWECEQCKEKFEQTPLYRFRLHQRQHERITTKQFKCRLCERNFAKKANLEAHQRIHKVEAQTNATYCCNVCKATFVDDYELKRHKYQQHNAEHPLKCKICLRGFSSKVFLQRHINQFHPDHNHNSNDSSSTTTTTTSSGATSPTYQHVCLNCNVGFKTLQKLQSHLLLGRDTNGNCLYSTSNKLERRKLQRQGVFPCYHCPRRFHLRSQLDKHLNTHDARLRPFQCEQCITRCRSAFELKQHVNVAHLNIKAFSCDKCGKCFGYKKDLRDHMLFHAEINVKCTEEGCDYVCKNEKALNDHIRHKHRLLSCEYCHEQFTRQKLTAHLRKIHRSEIDVELACESDSYYKSQLLNNNNDITQISFNLLNTQQKQQTQQQLQLNKTTTTSITSPSITSSSSLIETSLAESQLQTTAASSITSNSSTSSLLTTIIASSSAPTSSSTTTCLTSASSCNLAGTNLSSCSVVESHNHLINDVEHHDRQQPQSQQQNHHDQLHNIFANDVHDGSNGSSTLALNGLVSSTDHVNDANDHLNLVSNDASNIFLVPSNASTTANDNQLDQYFMASLMDTEQEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -