Basic Information

Insect: Cochliomyia hominivorax
Gene Symbol: -
Assembly: GCA_004302925.1
Location: PYHX01000824.1:477204-488061[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.1 5.2 7.7 0.7 1 23 1759 1782 1759 1782 0.91

2 12 7.2 3.7e+02 1.8 1.5 1 23 1943 1965 1943 1965 0.92

3 12 0.00073 0.038 14.4 2.8 2 23 1968 1989 1968 1989 0.97

4 12 3.5e-05 0.0018 18.5 0.2 3 23 1997 2017 1995 2017 0.98

5 12 4e-06 0.00021 21.5 5.8 2 23 2024 2045 2023 2045 0.97

6 12 8.1 4.2e+02 1.7 0.1 5 23 2058 2076 2057 2076 0.96

7 12 0.035 1.8 9.1 0.1 2 23 2115 2135 2114 2135 0.96

8 12 8.5e-05 0.0044 17.3 0.4 1 19 2141 2159 2141 2163 0.95

9 12 4.9e-06 0.00025 21.2 1.8 1 23 2171 2193 2171 2193 0.99

10 12 0.00017 0.0088 16.4 6.5 1 23 2199 2221 2199 2222 0.96

11 12 0.001 0.053 13.9 6.4 1 23 2227 2249 2227 2249 0.99

12 12 0.0026 0.14 12.6 6.0 1 23 2255 2277 2255 2278 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.1	5.2	7.7	0.7	1	23	1759	1782	1759	1782	0.91
2	12	7.2	3.7e+02	1.8	1.5	1	23	1943	1965	1943	1965	0.92
3	12	0.00073	0.038	14.4	2.8	2	23	1968	1989	1968	1989	0.97
4	12	3.5e-05	0.0018	18.5	0.2	3	23	1997	2017	1995	2017	0.98
5	12	4e-06	0.00021	21.5	5.8	2	23	2024	2045	2023	2045	0.97
6	12	8.1	4.2e+02	1.7	0.1	5	23	2058	2076	2057	2076	0.96
7	12	0.035	1.8	9.1	0.1	2	23	2115	2135	2114	2135	0.96
8	12	8.5e-05	0.0044	17.3	0.4	1	19	2141	2159	2141	2163	0.95
9	12	4.9e-06	0.00025	21.2	1.8	1	23	2171	2193	2171	2193	0.99
10	12	0.00017	0.0088	16.4	6.5	1	23	2199	2221	2199	2222	0.96
11	12	0.001	0.053	13.9	6.4	1	23	2227	2249	2227	2249	0.99
12	12	0.0026	0.14	12.6	6.0	1	23	2255	2277	2255	2278	0.96

Sequence Information

Coding Sequence: ATGACTGAAAACGTTCAGTGCCCAGTATGCACGTTATACCTGCATGCAGGTATGAATCTTTCGGATCACTTGGAGACACATCCGAAAGAACAAGTGATACGAGCTTTAGTACAAATGACTATATCTGGCACCGGAATTGGAGGTAGTAATAATAATACCTTAGCCTCCGTCTTAGCTGGAGaaagtagtagtagtagtataGGCAATGGTAATAAAAAACCAACTAATAACGAGTTGGATGAAAAacctgtgccgaatcttaatgATAAGGAGCTCAACATTAGCAGTGCTAATAGTAGTAGCAGCAGCCCTAGTGCGAGTTTGAGTAATTCCGCCAGCAATTGTTCAGTGTCAAACTTAAGTGTTAGCAGTGGTCAAAATTCAaacaatgttttaaatttttccacaaCAAAAATCGAACGACACAATGATACGGAAAGAGATAAATTGACAAGATCACCTACATCTAAATCTTTGGTTAAAGCAGAAACTAATACGGTGGCAATGGCAAAAGATAATAATATAGCTGCTAATGAAAATGTCAACACAtgttttccaaaacaaaattttaatcaaaccaATTCCTCATCTAACACAACAAGAAACGCAAATCATTCATACAGTACAAATACTGTTGAATTGTCAAATGGTGGTaatattgcaaataattttaatgtcttCGGTGGAAATCGGTATGATCATCAACAGCAGCGTGCTAATGCTAATAATCAAAATCAGTTAAATACTTCACCCCACATGCCACCACCACCTGCACCAGGAACTGCTAATGTGCAAAGTCAAAATGTTGGTCATCATCAACATGATGTTGGACGCGGAATTGTACCAACAAGTTCCAGTGGTTCATTTCATACGTTGCAGGCACAACAATTACCACCACCCCCACCGCATCATAGCACAACACATCTGGGTAATGCATCAAATAGTCATCGTCAGACAACACATATGTTTGCAACAGGTCAACATCAACATCAAACCTCAACGACAACATCTCATCATCAACaaggtttaaaagttatttacacACCAAATTTGCCGCCACCGCCACCTTTGCAGctATTTACTTATCAACCACAAACACATTTGCAACATCATCAGAAACCCCCACCGGCCTATGGCACTGCAATTAGTCAAATACGATCTCAACATAATCAAAATAAGCATCAAGTGACAGCAGGATCATTGGCAACACAACAACAAAGTCATACACTAACAAATCAAACACATTCAATtttacaacagcaacagcaacagcatatgcaacagcaacaaacattGCAACATAATATAAGAATTCAAGTACCACCGCCACCACCGTTACCAATTCCAGCAAAACATGGTTTGTCAATCTCTCATCATTCAACATCAGCATCTGCAACATCAACTgcaatagcaacagcaacaacatccaCATCATCAAGACATAATCTGCAGCCCCAACACCAAAATTCTCAACAAATACCCAAAACGGAATTAGCCCACCAACAGCATCAGCagctacaacaacagcagcgAGAACATGAACAAAATTCTGGTAATTCCGTTAATAACAACCAAAATTCCaatgtaaatgaaaattcaaataaaaccacaaaaggAACATCTCTTTCGACAGTCcaaaattcaaataacaatATTCCATCATATTCACAAGTTTCGATTAGCCCATCTACTGCTTCGGCGTCAATAGCCGCAGTAGCAGCGACCACATTAGGTAGACACACAAATTCCCCATTTGCAGCATTACTGGCAGCTGCGGCTGGAACACCGTCTCCATCAAATCCATCGTCTGTTTTACGTTATGCCGAATCACCAGTAGCTCACTATTTAGAACGAGAAAATGGTGACTTTATTGTACAGGAAACACCCAAACATATTGTTGAATGTGTTGAAACTGACAATGGAGAGTTTTCTGTTATTGAACGTATATATCAATCACCACCTAGTGTTTTACATatacatgatgatgatgatgacgacgatgatgatgaggaCGGCAATGGCGGAAAGTCTAAGAAATCACTGAACCCAGATAGTGAAAATAAACGTAAACAATCTGAAAgtgacaacaataaaaatgtaaaggaTGAAACGAACGAAAAGCAATGTAAACTGAATgtagataataataaaaattcgaatgaAATACATACCACAACTAATaagaaatctaaaataaatgaGGAAAATTTAGATAATAGCGATATTGTCGATTTTGTTAGTATTTCGAGTGACAGCGGAGATGAAGAGGAATTTATTTCGCAAGAAAGTAAGGAGATCAACAATACCAccgaaaagaataaaaacaattcaaattccTCCACATCCACATTTGAACCAACACCAAGTACATCAACCTCAGTTGTAACACCATCAACAACAGTCACACAAAGCGGTGGTGGTGAAAATCAATCTACGTCCTCGTCATTATTAAATTCGACTGCTTCAACTTCTGCAGTCATGATGAATACCACCCAAACACAACAAAACACTGGAGCCATTACAACTAACAATGGCAGTagaaaaaaatcgtcaaaaaataCTATCACCGTTCTAAGCGatgttcaattaaatttaaatgaatactTGGATCTAGTGGGTAATATTATTGCTTCGAGTAAAGTAGCAGCAGCTCAACGTAAAACACTTGCAACAATTGCACCCTTACCActtgtaaaaattgaaaaagaagaaCCTATGGATGAGTATATAGCAACAAATCCAACTACAACTGCAACAccaactacaaaaacaacttttgaaactccaccaccaccaacaactCCTTTTAAGGCCAATAAACATGAGACTGAAGAAACAACTGATACCCCTAGCAGTAGTAAtaacagtaataataaaaataatagttataaTAATAGACAAACAATTAATAGTAatcataatacaaatttaacaaaagatcTAGAATACGATGATCAAGAGGAGAAAAAACCTCAGATCTTcgaaaatggaaatgaaaacgAAAGCTCATCTTCTAATGTTATGTCAAACACATCTTCTAATCTTATGTCTATAAATTCCAGTCACGTTACCAGTGTTATACGTATGGCCACAACTAGTCAGCATCAAACTCAGCAAGATCAGCACCTATTAAATTCATCAGAGAATAATAAAACCACTGCTATAGCTGAGGATCTCTCACAGCCCCAACGTAAAGTTCAATCGTTAGGTCATCAGATGCCATTGGCTCGTAAAGGTCCAAAGAAACTAGTTATTAAGCCGAAATCTTCAAAGACTGAAGTTTTGAACAACACAGCTTTAACCACTCCATATAAATCAAACCAAAATCAATTCGATAACGGACAAGAAATGCCCACAACTTCTGCTAAAGCTAGAAAAGAATATACTAAGCAAATATCTGCTGATGAAGATGCTTTAATAAATGCCTCagatataaaagttaaaaatgaacCTATCACATCTATAACATATGAGAATCAGCAGCAACTACAACAGCATCAGCATGCTATTCATCAACCCAACAACACCACAAGTTTCAGTATCTTGGAGCAACATCTTAATGCTAAAGAACCAATACTCGagtttaaagaagaaaaacccTGCATTCAGGAAGCAAGTGTACCTTCAACATCGAtcataaaagaaatgaaagttgaaaataatgttaacgaTGATGCACGTGTACTCTATGATTTTGCAAATTCAAAAAAGTCACAAAACgaaacatcaacaacatttcCATCATCCACATCGCTATTCTCTACTTCTAAACAAACTTCAATAGAAATGTCATCAGTTGATGAAGCACAGCAAcaactaacaaaaaatataaatcatgaaCATGAtacatcatcatcttcatctaCTTATTCATCACAATCGGCCATGGATGCAACTGTACCAGTAGAAgatcataatgaaaattcttCTACAACAAATGCAGTTCAAACAGCTGGAACACATCAATCCAATCAAATGTATACGGAATTTCATTTCAACTATTTATATAACAATGGTGGAAGTAATGTAACTGCTATTGCTCCAGAACAAGTGGACATTAAAAATTCGCAGGAATTCAATACATTTTATCAAAActccaataataataataattccatgTTATTGGAAGACTCCTCATCTAGCAAACACTATACAGATTATCAACAACATAATAgtaatcataatcatcatcaattGCAAacgcaacagcagcaacaacatcatcaatCAGTTGGAACATCACACCATCATCAGTGGTTTAATAATGGCAATAATTATCAAACTTCTGAATCTAATGTTACACCAATCACCTCAAATCATTCAGTTTCAAATATGAATAGTGCTTTATCTGTGGATGGCAATAGTGGTGCAATGGATGGCAGTGAAGTTGGTAAATATTTAGATTTGGATTCATGTAAACGAGAACAAAATCTTGATATGATTGTGGGTGAACGCATTACCGTACCACCTCCACCCCCACCATCTTCGTCAACATCGTGTTCATTTAATGGTGCAACTGACAACAGTATGGCTGGTATTTGTTCAACCGCTGCCACTCTTAATATACGAACAGATGAGAAAATGCCAGCGAAAGGAGAAATATCTGAACAGGAAAGTAATTGCGACATAGACAATTCTTGGAGTCAACCGATGTATGGTGACATTTCTGCCCGTTTCTTTAAAACAACATTTCCCGGTATCTTCCCGCAGGATAACGGTTGGAATCATGAGGAATATTTTACGGTTCAGGATTTGAGTGCCTCAACAACTGCTCAAGCCACTAACAGTGCCAGCAGTAGGTTGAAAAgttttgagcctTTAAATAGCAACAGTAGCAATGGTAtgcaaatattttctcaaaattccaaTGATAATTGTAATATTGATGTAATGCCCTCAACATCAGCTAAAATACGCAAGAGACGTAAGCGTAATTCTCAAGATGgcaaaaatttgtcacaaccaAATGGTAAACGTATGCAGCCAACATCTACTGTGACATCACAACAAATGATGATACAACATCAAAATGATATAACAGGGGTAGAATTTAACTTCCAACATCATCAACAGTTGCAACATGAAGGACAACATTTGCAGTCTCAACAACATTTACAAGAACCTAGTACATCATCAGCATTTTTGGCCGGACCATCAAATGCTAATAGTACTAATTTTAATATGCAACAACATAATCAACAACAGTTCCCGCAAAATCAACAAACAACACAGCCACAACCACATCAAACCCAACAAAAACAACGCACAAAAGTTTACGAATGTGGCCATTGTAATGccaaatattcaaaacttaaagatCGTAATGCCCATATGGTTGACGTACACAATTATATACGCCAAAATAGAAGATTAGTATGTCCTACTACTGGTCTTGTCACGCCTCTAACGAATTCCGATATACAAGATGTTGCTTTGCCTACAACAAGCGCTGCTGGTAATATGTTAATGCCATCCCTTCAAAATGCCGACTGTATGGGCGATTACAAACAGGGTAtagttaaaatagaaaatgatcAGCGTGATCTAATGGGTGTAGAACCAATCAATGCAAATTTAAGTGCTAAAACGGAATTTGTGGAAGATGATAAACGAAATCTAGCACTAGTTCCATTAAATACCGGCAGTGGCGAAACAAATCTTGATTGTGATACCAAACCACCAACAAATAGTTTACCATTATCATTAACAACACCCACCAGTAAATTAACAACACTTTATCGTATGTTGGTCTCCTTTAATATgacaacattaaaacaaaaccaaagtCTATCAGAATTTGATGAGAATCTTATAAAATCTTCAATattcttttgttatatttgtcGTCAGAATTTTAATTCGGTGAAATTTTACGATGCTCATTTAACTGAACATCCGGCAGAATGTTTTACGTGCggaaaaaaattccaaagatggaaaaatttttcattgcatTTAAAACGTCATTTAGGCTGGAAGGAATTTGGTTGTACCGTATGcgataaaaaatttgttgtacGAAGTGCACTCGTCGAACATATGCGTATGCATTCGGGTCTATCgccattaaaatgtaaaatttgtgGTAAACACTTCAAGCGTTATTCAAACTTGACGCAACATCGTAAACGTCACACGAAACAAATTGTTCGTAGGAAAGAATACGTATGTTATTGTGGTGAAGTTTTACCTTCGAAAGCACGCTTCTTGTGGCATAAGGAAACTCATGACTCTAAACCAAAATGTTGTCCACATTGTTGTGATCGTTTTGTGCATGTTAACTCTTTGCGACGCCACATACGTCTTGCACACTCAGATAAATTCGATTACACCGAACCAATGGAGTGCCCCATCTGTAAGCAGATATTTGCCAAAGCCTCTATGAAAGCACACATGGCAACACATACCACTGAAACGCAATATGATTGTGCTATTTGCAATAAATCGTTCTCaacaaaatggaatttaaaaatacactCTTGGGTACATGCAAATCGAACGGCCAAACCTTTTAAATGTGAACACTGCCCCAAGGCATTTGTGCGCgaagttgattttaaaaatcatatgaattCCCACAAACAAATCAAACCATACACCTGCGAAGTGTGTGGCTGTAAGTTTATACGCAAATACAATTATATGCGCCATCGACGAGAGCATCAtggcaataaaaaatatacctgTGATCTATGTAAAAAATCGTTCCATCGTCATTACTATCTCATCGAGCATAGGCGCATCCATACCGGCGAACGACCTTTTCAATGTACGATTTGCGGTAAAAGTTCAACAACCAAAACTAATCATAATAAACACTTAAAGATACATCATTCACGTGATCCATTTACAGTGGAAGTATAA
Protein Sequence: MTENVQCPVCTLYLHAGMNLSDHLETHPKEQVIRALVQMTISGTGIGGSNNNTLASVLAGESSSSSIGNGNKKPTNNELDEKPVPNLNDKELNISSANSSSSSPSASLSNSASNCSVSNLSVSSGQNSNNVLNFSTTKIERHNDTERDKLTRSPTSKSLVKAETNTVAMAKDNNIAANENVNTCFPKQNFNQTNSSSNTTRNANHSYSTNTVELSNGGNIANNFNVFGGNRYDHQQQRANANNQNQLNTSPHMPPPPAPGTANVQSQNVGHHQHDVGRGIVPTSSSGSFHTLQAQQLPPPPPHHSTTHLGNASNSHRQTTHMFATGQHQHQTSTTTSHHQQGLKVIYTPNLPPPPPLQLFTYQPQTHLQHHQKPPPAYGTAISQIRSQHNQNKHQVTAGSLATQQQSHTLTNQTHSILQQQQQQHMQQQQTLQHNIRIQVPPPPPLPIPAKHGLSISHHSTSASATSTAIATATTSTSSRHNLQPQHQNSQQIPKTELAHQQHQQLQQQQREHEQNSGNSVNNNQNSNVNENSNKTTKGTSLSTVQNSNNNIPSYSQVSISPSTASASIAAVAATTLGRHTNSPFAALLAAAAGTPSPSNPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVETDNGEFSVIERIYQSPPSVLHIHDDDDDDDDDEDGNGGKSKKSLNPDSENKRKQSESDNNKNVKDETNEKQCKLNVDNNKNSNEIHTTTNKKSKINEENLDNSDIVDFVSISSDSGDEEEFISQESKEINNTTEKNKNNSNSSTSTFEPTPSTSTSVVTPSTTVTQSGGGENQSTSSSLLNSTASTSAVMMNTTQTQQNTGAITTNNGSRKKSSKNTITVLSDVQLNLNEYLDLVGNIIASSKVAAAQRKTLATIAPLPLVKIEKEEPMDEYIATNPTTTATPTTKTTFETPPPPTTPFKANKHETEETTDTPSSSNNSNNKNNSYNNRQTINSNHNTNLTKDLEYDDQEEKKPQIFENGNENESSSSNVMSNTSSNLMSINSSHVTSVIRMATTSQHQTQQDQHLLNSSENNKTTAIAEDLSQPQRKVQSLGHQMPLARKGPKKLVIKPKSSKTEVLNNTALTTPYKSNQNQFDNGQEMPTTSAKARKEYTKQISADEDALINASDIKVKNEPITSITYENQQQLQQHQHAIHQPNNTTSFSILEQHLNAKEPILEFKEEKPCIQEASVPSTSIIKEMKVENNVNDDARVLYDFANSKKSQNETSTTFPSSTSLFSTSKQTSIEMSSVDEAQQQLTKNINHEHDTSSSSSTYSSQSAMDATVPVEDHNENSSTTNAVQTAGTHQSNQMYTEFHFNYLYNNGGSNVTAIAPEQVDIKNSQEFNTFYQNSNNNNNSMLLEDSSSSKHYTDYQQHNSNHNHHQLQTQQQQQHHQSVGTSHHHQWFNNGNNYQTSESNVTPITSNHSVSNMNSALSVDGNSGAMDGSEVGKYLDLDSCKREQNLDMIVGERITVPPPPPPSSSTSCSFNGATDNSMAGICSTAATLNIRTDEKMPAKGEISEQESNCDIDNSWSQPMYGDISARFFKTTFPGIFPQDNGWNHEEYFTVQDLSASTTAQATNSASSRLKSFEPLNSNSSNGMQIFSQNSNDNCNIDVMPSTSAKIRKRRKRNSQDGKNLSQPNGKRMQPTSTVTSQQMMIQHQNDITGVEFNFQHHQQLQHEGQHLQSQQHLQEPSTSSAFLAGPSNANSTNFNMQQHNQQQFPQNQQTTQPQPHQTQQKQRTKVYECGHCNAKYSKLKDRNAHMVDVHNYIRQNRRLVCPTTGLVTPLTNSDIQDVALPTTSAAGNMLMPSLQNADCMGDYKQGIVKIENDQRDLMGVEPINANLSAKTEFVEDDKRNLALVPLNTGSGETNLDCDTKPPTNSLPLSLTTPTSKLTTLYRMLVSFNMTTLKQNQSLSEFDENLIKSSIFFCYICRQNFNSVKFYDAHLTEHPAECFTCGKKFQRWKNFSLHLKRHLGWKEFGCTVCDKKFVVRSALVEHMRMHSGLSPLKCKICGKHFKRYSNLTQHRKRHTKQIVRRKEYVCYCGEVLPSKARFLWHKETHDSKPKCCPHCCDRFVHVNSLRRHIRLAHSDKFDYTEPMECPICKQIFAKASMKAHMATHTTETQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEHCPKAFVREVDFKNHMNSHKQIKPYTCEVCGCKFIRKYNYMRHRREHHGNKKYTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -