Chom009765.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01000578.1:285350-292553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.026 1.4 9.5 3.7 2 19 471 488 470 490 0.95 2 15 4.4 2.3e+02 2.5 0.5 3 23 533 554 532 554 0.93 3 15 1.9 99 3.6 0.4 5 23 564 582 561 582 0.92 4 15 6.7e-06 0.00035 20.8 0.6 1 23 589 612 589 612 0.95 5 15 5.9e-06 0.00031 21.0 0.8 3 23 621 641 619 641 0.97 6 15 0.094 4.9 7.8 2.7 1 22 691 712 691 715 0.91 7 15 0.0047 0.24 11.8 3.0 1 23 720 742 720 742 0.96 8 15 0.096 5 7.7 0.2 1 23 758 783 758 783 0.96 9 15 0.036 1.9 9.0 1.8 1 23 795 818 795 818 0.96 10 15 0.00068 0.036 14.5 3.0 2 23 824 846 823 846 0.95 11 15 0.00096 0.05 14.0 3.5 2 23 850 872 849 872 0.92 12 15 0.57 30 5.3 3.2 1 23 878 901 878 901 0.94 13 15 0.00027 0.014 15.8 0.4 1 23 906 928 906 928 0.98 14 15 8.9e-06 0.00046 20.4 3.1 1 23 934 956 934 956 0.99 15 15 0.036 1.9 9.1 0.6 5 23 972 991 962 991 0.81
Sequence Information
- Coding Sequence
- atggcgGTTAATGTTTCCACAATCTCcagtatttgtttatattgtaaaaattcTTCATTGAATGATGCTGAAAAGGAATTTCATGATATATTTGATGAAGTGGGAGTTGAATTGCAATTACCCAAATTAGTGGAAAAGTTTTTCCACATTAAagtggaaaataataaacaacaacaattatgtGATGATTGTGTTAATCGTTTAATAGAGTTATATGATTTAGAAGAACATACCAAAGAAAATGACAAAAGTTCCAACAAAACCAAGAATTCAATATTGGAGAAGGATATAGAGCCCgaagaaaatattgtacaaataaaagaagaagTAGAGGATTATgaagaaaatgataaaattaatacagATGAAAATTTTGAGGAAGAAACTAATGTATCAAAAGGTGATATTAATGGAACAGATCATAATGAGGAAATTCTTACTAAAAACTGTTCTGAAGAAttgcaaaataatgaaaatcttgaaaacaatgaaaatactTATGAGGATCACAATACTAATAGCATTGTTGGAGAAGATTTGTCTCTGGACTTTGTTGAACAGAAACGAGCAGTTGTGGCCGAAATGGAAATAACCGAACCCAGAGAATctgaatataatgaaaatgaagtcaatgataatgataacaatcattccaaatttattatagaaaatttaactacTGCAAATAATCAAGAGTTCGAAACCATAAACGAAGAtcaaatagaagaagaagaaattgaggaaaaaatttcAGATGTCGAAGATCCTGAAGATGATGTCAAtgatgataatatttttatagccgAAGAAATATATGAATCTTTAGAGGATTCTAGTAACATTGATTCACAAAATGACAATGATTTGGATATTATTGTTGAAGAGATTCAAATAGAAGAACTGGAAGATGAGAATGATGGAGAAAATGTTAATGGAGATGATAATATTTTGGAtacaaattctaaaaatgtCATGGAAACGGATACAGTATTATTAAGTTCGAAAGAAGCTAATAACACTGAAGAGGAAGTTGTAGAGGAAATTACCGAAAAAGATCCAAATGATATGCAAGATGATGCATGTTCTATAGAAGAGGAATATTTAATAGAAGaaaTCACCTGCTCTCAGGAATACGATACAGTtgatataaatgaatatttagatAAAGTTTTGACAACAAAATTTCAAGATCTACAATTGGATTGGAGTGTAGAATGTAATTTATGTTTTGAACAATatcagaaatttcaaaatttattacaccacaattgtattaaaacatttgaagatgaacaacaatattattgtatatttagagattgtaaagaaaatattgagaatttaaatattttagccaGACATTTAATATTAAGACACTACGATAAATTGGAAAGCTTACCCATTTATGGCAAATGCACTGATTGCCAGAaaacattttccaattttttagattttaataaacacTCCTGCTGTCGTACCATAAAGAAGAGAACTGGCAGCCGAAATTATTGTACATCATGTGATATGGATTTTCAATCTTTAAAAagATATGTCTTCCATATGcaatttcatttaacaaatcATCGTccaaaaatctgtttattgtGTGgtgatttatttaacaattccAATGAATTCTTTGAACATACACAATACAAACATAATCCGGAGGCAGCTACGGCTTGTATAaaATGTGATcgtttctttaaagagaaagaaatatttgaaagtcATATGGAATTGCATAAAGATGCAAAATATCAATATGCCTGTTCTTATTGTCCTAAAATGTATACCAATAAATATGGTTTGAATCAGCATATGgatatCTATCATAATAACAAATCGAAAGCTATGATATGTGATTATTGTGAAaaagaatttgttaataattcttCATATCGGAATCATATGAAATCTCATGCTTCTGATGTACAAGTAGAATCTTTTATATGTAGTGCTTGTGGTTTCATAATCAATAATGAAGATATGATTAAGaatcatacAGAATTAGATAAAGATTCCCCGTGTTATGCTTCACCCATTGAAGAAGAAATTGTAGGTTTTGGTTATACATGTGAAAattgttctttagattttcatacCATAAAGCAGTTAAAACAACATCGTTTATCTAAACTTCACAATGATGAACTATTCCATTGTGGTGTTTGTCGTAAGGCCTTTAAGAATTTAAGACAAATGCGTAATCATACTATTAACCACAAAGATATGCTTAAATGGGAAGAAGCATTTCCCATAACAAGATATTTTGTATGCAACGTTGGGGATTGTCAGGAGGCTTATACCATTTGGACTACATTATATTATCACAAGAAAAGACCACATAAGTCAGCTGAGGATTATGAAAAGTCCAAAGAGTTTAAATGTCAATTTTGTCAAATCAATTGTTCGTCAAAAATGTCTTTAGCCATTCATGTGGCCAGAAGTCATAATAATTcAAATATTACTTGCACTCATTGCAAACAGTCCTATAGATCCCAAAAACTTTTACAAGATCATATTGATAAATTCCATGTGCCCGTAAAATGtgatatatgttttaaaaatttcaaacatcgtcgtaatttaaaatctcacaatCAATTGGTGCATCTTAATGTAAAGCGATATTTTTGCTCTCACTGCCAAAAGGgttatttctataaaagtgaAAAGGATGCCCATGAACAGAAGgttcATCCTGAATTTTCCTACAGAtgtgaaatttgtaattttgttacCAATTATCCAAAATCTTTAGAAATTCATATGGATAAACATAATAATCAACAGAAATTTAAATGTACAATTTGTACCAAAACATTTGGtagaaaacaattattaaatactCATTTAAAAcgacatgaaaataaaaaagaatttatttGTTCTTCCTACGCTCTCGAATATAATTGTCCTGCCTCTTTCTATACACTCCATCAACTGAAAACtcatatagaaaataaacatcctaattcaaaatatattatggaTAATAAACGTAgaagagataataaaaaaacttataacaCTTTATCCATGGATGAGGAAGAAGATGAagataattatgaaattatatatacaagtgataatgttaaaaaggaaacaaaacgtgctaaaatttctatagaaaataactataACGAATCAGAGGTTGAGAATGACTTATCGgaagaaaatgaaatggaatCGGAAGAACAAAAAACTGATAATGAATATGAAACTATTTGCAGTTGA
- Protein Sequence
- MAVNVSTISSICLYCKNSSLNDAEKEFHDIFDEVGVELQLPKLVEKFFHIKVENNKQQQLCDDCVNRLIELYDLEEHTKENDKSSNKTKNSILEKDIEPEENIVQIKEEVEDYEENDKINTDENFEEETNVSKGDINGTDHNEEILTKNCSEELQNNENLENNENTYEDHNTNSIVGEDLSLDFVEQKRAVVAEMEITEPRESEYNENEVNDNDNNHSKFIIENLTTANNQEFETINEDQIEEEEIEEKISDVEDPEDDVNDDNIFIAEEIYESLEDSSNIDSQNDNDLDIIVEEIQIEELEDENDGENVNGDDNILDTNSKNVMETDTVLLSSKEANNTEEEVVEEITEKDPNDMQDDACSIEEEYLIEEITCSQEYDTVDINEYLDKVLTTKFQDLQLDWSVECNLCFEQYQKFQNLLHHNCIKTFEDEQQYYCIFRDCKENIENLNILARHLILRHYDKLESLPIYGKCTDCQKTFSNFLDFNKHSCCRTIKKRTGSRNYCTSCDMDFQSLKRYVFHMQFHLTNHRPKICLLCGDLFNNSNEFFEHTQYKHNPEAATACIKCDRFFKEKEIFESHMELHKDAKYQYACSYCPKMYTNKYGLNQHMDIYHNNKSKAMICDYCEKEFVNNSSYRNHMKSHASDVQVESFICSACGFIINNEDMIKNHTELDKDSPCYASPIEEEIVGFGYTCENCSLDFHTIKQLKQHRLSKLHNDELFHCGVCRKAFKNLRQMRNHTINHKDMLKWEEAFPITRYFVCNVGDCQEAYTIWTTLYYHKKRPHKSAEDYEKSKEFKCQFCQINCSSKMSLAIHVARSHNNSNITCTHCKQSYRSQKLLQDHIDKFHVPVKCDICFKNFKHRRNLKSHNQLVHLNVKRYFCSHCQKGYFYKSEKDAHEQKVHPEFSYRCEICNFVTNYPKSLEIHMDKHNNQQKFKCTICTKTFGRKQLLNTHLKRHENKKEFICSSYALEYNCPASFYTLHQLKTHIENKHPNSKYIMDNKRRRDNKKTYNTLSMDEEEDEDNYEIIYTSDNVKKETKRAKISIENNYNESEVENDLSEENEMESEEQKTDNEYETICS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -