Basic Information

Insect: Cochliomyia hominivorax
Gene Symbol: -
Assembly: GCA_004302925.1
Location: PYHX01002890.1:697895-704716[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.027 1.4 9.4 0.2 1 22 1202 1223 1202 1226 0.90

2 8 0.43 22 5.7 0.7 5 23 1698 1717 1696 1717 0.96

3 8 6.4e-06 0.00033 20.9 3.6 3 23 1743 1763 1742 1763 0.98

4 8 2e-06 0.0001 22.5 3.6 1 23 1769 1791 1769 1791 0.99

5 8 1.3e-05 0.0007 19.8 0.8 1 23 1797 1819 1797 1819 0.99

6 8 0.0029 0.15 12.5 3.0 1 23 1825 1847 1825 1847 0.98

7 8 0.00088 0.045 14.1 0.0 2 23 1854 1875 1853 1875 0.96

8 8 0.005 0.26 11.8 1.7 1 23 1881 1904 1881 1904 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.027	1.4	9.4	0.2	1	22	1202	1223	1202	1226	0.90
2	8	0.43	22	5.7	0.7	5	23	1698	1717	1696	1717	0.96
3	8	6.4e-06	0.00033	20.9	3.6	3	23	1743	1763	1742	1763	0.98
4	8	2e-06	0.0001	22.5	3.6	1	23	1769	1791	1769	1791	0.99
5	8	1.3e-05	0.0007	19.8	0.8	1	23	1797	1819	1797	1819	0.99
6	8	0.0029	0.15	12.5	3.0	1	23	1825	1847	1825	1847	0.98
7	8	0.00088	0.045	14.1	0.0	2	23	1854	1875	1853	1875	0.96
8	8	0.005	0.26	11.8	1.7	1	23	1881	1904	1881	1904	0.97

Sequence Information

Coding Sequence: atgAATGAAATACTAAATTATGGAATTAATGAAAGAGACGTGGTTTTAAGAGAAGCTGAGGAAAAATCCACCTTGCGCGATCACTTGAAATGTGGTGAGGTATACACTTGGCTTTGTGCTGGTGAATTATACGCCATAGAATGTATTTTATGTGAAGATCGGCCCCTCTGTCCTTTATCTGAATTTCCACAACATATGGAAATTTGGCATACAGATTGGCAAGATCAGTCATTAAGTCAAACACACGATCAACATGATATTTATAATACAGAAGATGAAGATCAAGAAGAAGAAGACGACGAGGAACATCACCATGATTTCTTTACAACCGAAGATAGCGGCTTATTTGAGGCTGAAGATCAATTACAACACATCAGAGTAAGACAAGAAGATGACTCAGCTTTAGAACCTTTTGAACAGGTATTAATACAACAAGATAATACCATAGATTTCACACAACTTAAAGAAGATGGCGAAGAAGCAgagaataaactaaaaaatgtaaataaacaggTAGCTAAAGAGGAAAAAGCGGTAAAAGGTGTAAATTCTTATGATCAGTTAAAATTGAATGTAAACAACAACTTAACATTGGGAAAACATAAACAAACTAATAAAACTGTTAACATAACAGAAAATGAGAGAGATCAGGAGGATTTTCAAACAATTACAGagagtgaaaatgaaaataaagaagttAACGAAAATGAGAGAgttttacaaacaacaacaacaacagagatttcaaattgtaaaaatgaaaatgaaacaaaatttaaagaatttttaaaaaatcccacaatttttaatagaattaaaagaactggtaaaaaatttacgaaaacaaatgaaatgagatcgaaatattttaaaaaatctaataaaataacaaaaacaattaaatataatttaagaaaaattaaagaaattaaaagaaatttattagaaatctTAAGAAATTCAACAAATTTACAAGAATTAACAGAAACTGAAAGTgaaacaagtgaaaatgaaatGCAAGAAGAAGAATTCATGAAATCTttagaaaatgaacaaaattttaatcaaataaaatcattaaaaattaataaaaataaagaaattaaaagaaattttcagaaaattttaagaaaatctcaaaaattgcaacgaATAACTAAAAGTGAAACAAGTGGCAATGAAACATGTGACaatgaaacaagtaaaaatgaaacGATGGAAACCAAATTAAATAcaactaaaaagaaattaataaaatctgaaaacatatctaaatatattaaagaaaacttaaataaaactaaagaaagtCATGAAATAGAAACGTTTGAAATTGAAACGGAAAATTCGAAAACGGAAAACTTAGAAAGCGAAAAGGAAACAAGAAAAACTAGTGAAACTGAggaaaaaatttgtgaatttgAAGAAGAAACAAGTGAAATTGAAAAGGAACCAAGTGAAATAGAAAAAGGAACGAATGAAAAAGCAACTGATTGTcgaataaacaaatattcaaaaattttaagaaaatctaaaagGTTTAATGGTGAAAAAGAAACTGAAGAGGGAACAAgtgaaaatgaaacaaattgtataaaaattaataatcaattacatgatgaaaacaataaaaatatatcacaaaATTCCTTAAAACTAAGAACATCCAAacgatttaataaaactaaagatGAACAAAACGAATCAAGTGAAATTGAAGAAGAAACaagtgaaattgaaataaatgatattcaaaataaagaaatattaaggaaatttaataaacctatagaaattaacaaaattacgctgaaaaaatctcaacaaattagaaaatctaaaaggttattaagaaataataaaactgaaacagaTGAAAGTAAAATAACAACAGAAACAAGTGAAAGTGAAACAAATAGTCTTAATAATagtgaaataataagaaaatgtgataattctaaacaaaatactagaaaactaagaaaatctttaagaatTTCTAAGCGATCATCAGAAAATGGAATAGAGGTGAATGGAAATGAAACACAATTAAAGGGAAATGGaaaggaatttaataaaaataaatcattggATGTTAATGCAAAGGAAttgatgaaaaatgaaattgtaattgaaataaCAACAGAAATAATGGAAGAGAGACACAACGAAACGGAGCTAAATGAAAATAAGAGAGAAACAACAACAGATAATGAAATAATGCAAACGAGAAATGAGCAGGAATTAAATGAAAGCACAACAGAGGGAAACGAAACAAGAGAAATAAAAGAGTTTCcaaaagaatttcaatattttaaggcGAAAAACtcaatttcatcaaataatttagGGACCAGAAGAAAAAGTACGAGAATAACTATGGAAAATTTAAGACATAAACTGCAAAACCCCAAAAGTAATGGAGAAGGAACTACCCCAAGAACtagaaaatctaaaagaaatttattaaaaacagaaaCAGACAGCGAAAATCAATATTctcttccaaaaaaatcaaacaaatctCATTTAAAGGGGTCATTAGAGAGAGCAAGTGAACAGAGTTCCACAGAATCATCTGAAATTATAGAAGAAAACTCTTTGCAAGATCGTTCAACGGTAACCAATAGAGaaggaagagaaaatttctcggaAATCGAAACTTTAGAATTTGATGATGATTATCACAGCTTTGCTAagagaactaaaaaagaaagCTCTCCAGAGGTAATATTGGAACAAAACTCTGAagcgaatttaaaaataaatacaattttagaaaCTAGAGATCAGGAAAAAACAATTGTGCCAATTTGGCCATCAAATCTGGcttctaaaaaggaaatcaaaCAGACTTCAGTTACACAATATTTTGTTAACCAAAACGAAGCAATAAAAACTCTCCCCGATAAGCAGCAAAAAGAGACTGAGAATAATACTCAAGATTCCTACTCTCTCAATTCTTATGATCTCTCAAATCCTACATCTCCGTCACAAAACATTACTCCAGGGGCCACCAATGTTGCACCTTTATCACCCCTCTCACCCAAAACCGAAGAGGAGCACTTTGAATTCTATGAACCCAAAGAGAAACTAAACAAGCAGCATATTAGCTATTTAATACAACTTTTTCAGCAACAACCCCGTCTATGGGATCAATCTCATCCAGAGTTCTTTGAACCACAAATATGCCGTAAATCTTGGCAACAAATTACCGATCAATGGAATGAATTTTGTAAACGAAATTTCAGAATCGCAGAAAACAACAAAAATCCCTTGCAAAAACGACGTGAACTTTACGAGCAACAAAATGAGAAAATCTtggaaatatatcaaaatttcccCATACTCTGGCATGTGGGCTGTTACAAAACGAAGCAGGCAAAAGAGAAAGCTCAAGCTTTTGAGAGCATAAGTAAATTGTTGAAATCCTCCTCCATACATTTATCTTCAATTGGAGTACAAAAACGTATACGTTCTCTGAGAAAATGCTatcgtttagagaaaattcgcCATCTACACGCTCAAGTAGAGCAAACCCCATTCGAAAGCGAATTTCGTCATTATGAGAGAATGCAATTTTTGGATAAACATATAGATCCATTTGTATGTCGTATTTgtagtaaaatatttgaaaatttggtaGGATTTCGTGAACATTTAGAGGTGAAAAATCATGGCAATATTTTGCAAGAAGAAAGTGAAAGTGAAGAGGAAGAAGATATTAAAAATGGGGATGATATATCCAATTCCCTATGTAATGAATCCACTGTTTATGATATCGACAATAATGATATACAAAGTTCTTGTAATTCCCCCCTCAATAGTTCCATTGATATTGAAAATCCTGAagatattttacaaacatttacacCTTTAACTTCAACACCGATAGCGGAACTAGACGATTTTACTGCCGATTTTCAAGAAACTCAAGAAATTTCCGAAAATCAAgatgttttaatatttccacCATCAGTTTCAACTGTCGACTCCTCCACGGCTAATTCATATATAGAGGAAGATCAATTGATAGAGGAAATAATGGAAACGGTAACCAGTAATGATAGTTTTACGAATCAAACCTTGGATCAGttcatTAACACGGCCACTAACTGTGAAATACCCGCCATTCAGCGCATGACAAATTTCACATCTGCTCTGAAAACCATCTCATTCGGCAAACAAGAAAACATGGATCCTATACATAACGATAGGAAAGATCCAGAACCAATCACAATTCCCACAATGGAACAGACAAAATGTGAACAAAACTCTTTAGATAATtcCCAATCTTCCAATCCGCTTATAGTTAAAGTTCAATGTGATAACTTTTCTTTGGATCTTCAATTAAATCCAGAACATGTAGAAACCTCTAATATTAATACTAACGATTCTGATCATGATCATGAATTTTATTCTTCAGCCGATATTAGTACCATACCTTTGCCAGATTATCAAATCCATAAAATGATTGAACTCTATCGCAAATATCCACAACTATGGAATCCTAATCATTTGGATTACAATTCACGCAATTTGAGACGTCAAGCATGGTGTTCCCTGACAGCGGAATTTAATAAATACGCTGATAAACAATTCTCCTGGCGTACAATGCATCGCAAATTGACAGATTATGCgaaatattataagaaattgATAACGGAGCAAGAGGACTATGAGGAATTAGAGAATAAATGGACGTTTTATGAAGATTTTAAGTTTATGGATGATGTGATTGTCGTCCATGGTGAATTGCAGCGCACGGTCCACCATcgtgataataatttcaaaattattgccATCTATGAGACCTTCCCCCAATTATGGGATATTAAACATACCGATTATAATAAACGTTGCATTAAGCAGCGTAATTTTGAACTCATGTGTAATCGGTTACAGGAGGAAAATAATCTTCAAATAACAACTGAACGTTTAAAAAATCGCCTCATCGAACTGAGAGCTCAATATAGATTAGCAAAGAAACAACGTTTGAAATGTGAGAAAAATGGTCAAACATTTTCAACCGATTTTGAATTCTATGAGGTATTGAATTTCCTAGATGATCACATAGATCCTTTTGTGTGTGAatgtaaaatagaatttaaaaaattaaccgaTTACAATCAACACCAGAAAAGGGAACATGAGAGGAAGACGCTAACAAGGAATCGCACACTTTCCTCAATATCTTTAGAAACGGATAGAAATCTGGATAATATTTGTCACATATGTGGCATAAAATTCACTACACGCAGTAATTTAGTGCATCACATTAAAAGACATGAGGGCATACGAAATTATGAGTGTCCCATgtgtaagaaaaagttttacacCTCACACCAACTAAAGGTCCACATACGATCGCATACAAAAGAATGTCCCTATACGTGTGAAAAATGTGGTAACTCTTTCGTTAGTGCCAGTAAATTAAATCAACACGTCAAACGACATTTGGATAGAAAAGATTTTCAATGTAATTATTGTCCGAAAGCATTTTATTCGGCTCATGAAAAGGATCGTCATGAAAAGAGACATTTAAATATCAGGGAAAAAGTATGTCCGGTATGTGGTAAAACTTTTGTAGCCGGCTCCTCGTATTATGCACACATGATGTTGCACAGTGATACCAAGAGATTTGAGTGTGATAaatgtgaaatgaaatttgCTCAATATGCTGgattatataaacataaaaagaaatatcaTTCGTAa
Protein Sequence: MNEILNYGINERDVVLREAEEKSTLRDHLKCGEVYTWLCAGELYAIECILCEDRPLCPLSEFPQHMEIWHTDWQDQSLSQTHDQHDIYNTEDEDQEEEDDEEHHHDFFTTEDSGLFEAEDQLQHIRVRQEDDSALEPFEQVLIQQDNTIDFTQLKEDGEEAENKLKNVNKQVAKEEKAVKGVNSYDQLKLNVNNNLTLGKHKQTNKTVNITENERDQEDFQTITESENENKEVNENERVLQTTTTTEISNCKNENETKFKEFLKNPTIFNRIKRTGKKFTKTNEMRSKYFKKSNKITKTIKYNLRKIKEIKRNLLEILRNSTNLQELTETESETSENEMQEEEFMKSLENEQNFNQIKSLKINKNKEIKRNFQKILRKSQKLQRITKSETSGNETCDNETSKNETMETKLNTTKKKLIKSENISKYIKENLNKTKESHEIETFEIETENSKTENLESEKETRKTSETEEKICEFEEETSEIEKEPSEIEKGTNEKATDCRINKYSKILRKSKRFNGEKETEEGTSENETNCIKINNQLHDENNKNISQNSLKLRTSKRFNKTKDEQNESSEIEEETSEIEINDIQNKEILRKFNKPIEINKITLKKSQQIRKSKRLLRNNKTETDESKITTETSESETNSLNNSEIIRKCDNSKQNTRKLRKSLRISKRSSENGIEVNGNETQLKGNGKEFNKNKSLDVNAKELMKNEIVIEITTEIMEERHNETELNENKRETTTDNEIMQTRNEQELNESTTEGNETREIKEFPKEFQYFKAKNSISSNNLGTRRKSTRITMENLRHKLQNPKSNGEGTTPRTRKSKRNLLKTETDSENQYSLPKKSNKSHLKGSLERASEQSSTESSEIIEENSLQDRSTVTNREGRENFSEIETLEFDDDYHSFAKRTKKESSPEVILEQNSEANLKINTILETRDQEKTIVPIWPSNLASKKEIKQTSVTQYFVNQNEAIKTLPDKQQKETENNTQDSYSLNSYDLSNPTSPSQNITPGATNVAPLSPLSPKTEEEHFEFYEPKEKLNKQHISYLIQLFQQQPRLWDQSHPEFFEPQICRKSWQQITDQWNEFCKRNFRIAENNKNPLQKRRELYEQQNEKILEIYQNFPILWHVGCYKTKQAKEKAQAFESISKLLKSSSIHLSSIGVQKRIRSLRKCYRLEKIRHLHAQVEQTPFESEFRHYERMQFLDKHIDPFVCRICSKIFENLVGFREHLEVKNHGNILQEESESEEEEDIKNGDDISNSLCNESTVYDIDNNDIQSSCNSPLNSSIDIENPEDILQTFTPLTSTPIAELDDFTADFQETQEISENQDVLIFPPSVSTVDSSTANSYIEEDQLIEEIMETVTSNDSFTNQTLDQFINTATNCEIPAIQRMTNFTSALKTISFGKQENMDPIHNDRKDPEPITIPTMEQTKCEQNSLDNSQSSNPLIVKVQCDNFSLDLQLNPEHVETSNINTNDSDHDHEFYSSADISTIPLPDYQIHKMIELYRKYPQLWNPNHLDYNSRNLRRQAWCSLTAEFNKYADKQFSWRTMHRKLTDYAKYYKKLITEQEDYEELENKWTFYEDFKFMDDVIVVHGELQRTVHHRDNNFKIIAIYETFPQLWDIKHTDYNKRCIKQRNFELMCNRLQEENNLQITTERLKNRLIELRAQYRLAKKQRLKCEKNGQTFSTDFEFYEVLNFLDDHIDPFVCECKIEFKKLTDYNQHQKREHERKTLTRNRTLSSISLETDRNLDNICHICGIKFTTRSNLVHHIKRHEGIRNYECPMCKKKFYTSHQLKVHIRSHTKECPYTCEKCGNSFVSASKLNQHVKRHLDRKDFQCNYCPKAFYSAHEKDRHEKRHLNIREKVCPVCGKTFVAGSSYYAHMMLHSDTKRFECDKCEMKFAQYAGLYKHKKKYHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -