Basic Information

Insect: Cochliomyia hominivorax
Gene Symbol: -
Assembly: GCA_004302925.1
Location: PYHX01002258.1:1078983-1084163[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.053 2.7 8.5 0.1 2 23 239 261 238 261 0.90

2 10 1.1 58 4.4 0.0 6 23 270 287 270 287 0.96

3 10 0.00077 0.04 14.3 2.0 1 23 293 316 293 316 0.98

4 10 0.00092 0.048 14.1 4.8 1 23 326 348 326 348 0.99

5 10 1.4e-05 0.00071 19.8 3.8 2 23 355 377 354 377 0.95

6 10 2.4e-06 0.00012 22.2 3.0 1 23 383 405 383 405 0.97

7 10 0.18 9.4 6.8 3.2 2 23 414 435 414 435 0.96

8 10 0.00025 0.013 15.8 1.4 2 23 441 463 440 463 0.91

9 10 8.2e-06 0.00043 20.5 2.0 2 23 470 491 469 491 0.97

10 10 0.00013 0.0066 16.8 3.1 1 23 497 520 497 520 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.053	2.7	8.5	0.1	2	23	239	261	238	261	0.90
2	10	1.1	58	4.4	0.0	6	23	270	287	270	287	0.96
3	10	0.00077	0.04	14.3	2.0	1	23	293	316	293	316	0.98
4	10	0.00092	0.048	14.1	4.8	1	23	326	348	326	348	0.99
5	10	1.4e-05	0.00071	19.8	3.8	2	23	355	377	354	377	0.95
6	10	2.4e-06	0.00012	22.2	3.0	1	23	383	405	383	405	0.97
7	10	0.18	9.4	6.8	3.2	2	23	414	435	414	435	0.96
8	10	0.00025	0.013	15.8	1.4	2	23	441	463	440	463	0.91
9	10	8.2e-06	0.00043	20.5	2.0	2	23	470	491	469	491	0.97
10	10	0.00013	0.0066	16.8	3.1	1	23	497	520	497	520	0.97

Sequence Information

Coding Sequence: atgatttgtcGTTTATGCTTAAAAGACATTCCAAAAGAATCTAGTATTAAGTTGTATGAAAACTTAGATATGTCCGGAGAATCATTAGAAATGGTCCAGCTAATTGAAAAGTATCTAGAAATTGAAatTAAACATAACGATATTGTGTCCACTATTATATGTCAAGATTGCTATGATCACTTAGAGGATTTCCATAGATTTTCGCAACAAGTTGCTGAGAAACAGTTAACGCTTCGTAATGAATTTTTAGATGTCAATCTAAAAAAAGAATTCAgctttgatgatgatgataatgatgctTGGGATAATGACGATCAAGAGGATAAGATGGAACCAAATGGAAGTACACAAGAAATGACTATTAACTGTCCCATAAGTACTTTTAAAGATGAGTCAGATGATAATAGTGATGAAGGTGATGAAAAAGATGAACAAGAGATGCCCACAGAGGACTTAATGAATAATATTATagataataatgaaaaagataTAATTGCACCCGACAGTGTTGCCGCTAACGATGATGTCGCATTGCATGAAGATGAAATATCTTCAGAGGaTGAAGATGTTCCTTTGATAAActtaaaatccaataaaaaatcatcaccaaagaaaaaagctaaaaaagtaACAAAGATACGAGAACTTAAAGAAAGAATAcctacaaaaaagaaattatctgCCGAAAAGGAAGTGGCCATGACTATGGATTTAATATGTGACATTTGTCAAACGCGTGTTGAAACCTGGAAGGGTTTAAGAGAACATTTCCTGTTAGCTCATACAAAAACTCCTTATATAAAATGCTGCGATATTATCTATCGCAAACCTAAAGCTCTTATGGAACATTTAGAATGGCATAAGAATCCTGATATGTTTAAATGtcaaatttgtaatgaaaatatgaCTAGTGCATGTAATTTGACAAAACATATAACAACGGAACATCCTGATAAAGCTgatataatagaattttatgaATGTGAACACTGTTCGAAACGTATACGCAATTATAATCTATTCAAAAAACATTTACGTTCCCACAATAAGGATAAAGAAGTTGAATGTCATATATGCAATAAAAGATTTTGCTCGGAAATAAATTTAACCCGTCATATCCAAAATACACACAAGTATAAAAAATGTCATGTTTGCGATGTTtgtggtaaaaaatttaaaaacaaagattcatttcaaaaacactATGCCAGTCACCAGGGTATCGTAGAACCTGCTGCTCAATGTTCTATTTGCAATAGGTGGCTTAAGAATAAACATAGTCTTAGATTGCATCGGTTTGTGCATGAGAAAAATCCCACACCATGTGATGTGTGTGGCAAAATATTTGAGACAAAACATCGTCTGCGCAAACATAAAGACTATTGGCATAAATCTGATTTGAATTTACAGTGTAATTTCTGTGAGAAAGTATTTCGTCAGGAGCGTAATTTGCATGAGCACATGGCCACCCATACGGGAGTACAGCTTTATAATTGTCCACATTGTCAAAAAGAATCACGCTCAAAATCGAATATGTATGTACACATTAAAAGACAACATCCGGCCGAATGGTGGAAATCGAAAATGGAACGTTTAAATATTGATCCAAAAGCGGGAAATCCCGATATGCAATCATAG
Protein Sequence: MICRLCLKDIPKESSIKLYENLDMSGESLEMVQLIEKYLEIEIKHNDIVSTIICQDCYDHLEDFHRFSQQVAEKQLTLRNEFLDVNLKKEFSFDDDDNDAWDNDDQEDKMEPNGSTQEMTINCPISTFKDESDDNSDEGDEKDEQEMPTEDLMNNIIDNNEKDIIAPDSVAANDDVALHEDEISSEDEDVPLINLKSNKKSSPKKKAKKVTKIRELKERIPTKKKLSAEKEVAMTMDLICDICQTRVETWKGLREHFLLAHTKTPYIKCCDIIYRKPKALMEHLEWHKNPDMFKCQICNENMTSACNLTKHITTEHPDKADIIEFYECEHCSKRIRNYNLFKKHLRSHNKDKEVECHICNKRFCSEINLTRHIQNTHKYKKCHVCDVCGKKFKNKDSFQKHYASHQGIVEPAAQCSICNRWLKNKHSLRLHRFVHEKNPTPCDVCGKIFETKHRLRKHKDYWHKSDLNLQCNFCEKVFRQERNLHEHMATHTGVQLYNCPHCQKESRSKSNMYVHIKRQHPAEWWKSKMERLNIDPKAGNPDMQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -