Chom005458.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- Znf711
- Assembly
- GCA_004302925.1
- Location
- PYHX01003639.1:2860910-2864038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.5 2.9e+02 2.2 1.5 3 23 280 301 279 301 0.95 2 10 0.2 10 6.7 2.2 6 23 310 327 310 327 0.98 3 10 3e-06 0.00015 21.9 0.6 1 23 333 356 333 356 0.97 4 10 0.00017 0.0087 16.4 0.5 1 23 365 387 365 387 0.93 5 10 9e-07 4.7e-05 23.5 0.5 1 23 394 417 394 417 0.96 6 10 3.8e-05 0.002 18.4 1.7 3 23 425 445 424 445 0.98 7 10 0.00021 0.011 16.1 3.6 2 23 451 473 450 473 0.97 8 10 0.1 5.3 7.6 1.4 1 23 481 504 481 504 0.92 9 10 2.1e-06 0.00011 22.4 1.6 1 23 510 532 510 532 0.98 10 10 3.3e-05 0.0017 18.6 1.7 1 23 538 561 538 561 0.98
Sequence Information
- Coding Sequence
- atggagaCTTGTTTATTATGTTTAGAAGTTAATAGAGATAATGATAAGGACTACATAGAGGCAAATTCACCACTATGGAAATCCCTGAATATAACCACCATACTAGAGCAACATTTTTGGCCTTTGGAAACTTTGTCCACCAACTCTTGGTTATGCTCATCATGTTGGGAAAAATTAgaagattttcataatttctatttGCATGTTGAGGAAGCTCATATGGTTTTTGTAACAATGAAAACTGAAGAAACGCCAGAAGTCCTGGAAAGCAAAGGAGAAATAGTACACAAAGAAGATAATGAACAAACCTTATCTAAACTCGAAGTAGAAATAGTTACAGATCCAAACACACTTCAGATTCTAAAAAATGAAGGAacattaaatcgaaaaattgaaGCGACTAAAAAAAATCGTGAAGTAATTGATTTCACTGAAGATGTAGAAGAATCCGATATTAATGAAACAATTGTGGATACATATATTGAATGTGATGCCATGGAGAATATAGATAATGATAGTGATATAACTGAAAACTCTCCTACAGATATCAATGAAACTATTGAtgaaatagaaaacaacaaTGAAACAATTGAACCTAGAGATGAAAATATATCAGAGGTAAATGAGAATATAGAAATTAGCACTTCTGATCTGGAATTAATGGAACAAGAATTAAATGATTCCAAAATTGAATCAGATTTGGAAGAAGATTTTGATATCAACAATTCTGTTGATTGCCAGCAAGATAAAAATTTACCAGAAAACTGCAAATTCCTCGATAGCAGAAACTCGCAAGAAGATGATGAATATATAGAGAAACATATGAAGGAGATTCTATGTGATTTATGTGAAACAAAATTGGAAGATTTTAATGCCATGAAAAGACATTTCCATACGGTACACAATCAAAAGGGATACATTCAgtgttgttataaaaaatactatcaTCGTGGCCACTTGGCGGATCATTTACGTTGGCATTTAAATCCTGAATTCTTTAAATGTTTGCAATGCGGTAAAAATCTATCAGATCGCAGTAATTTAAGGAATCATATAATACGAGTACATCGACCAAGTAATGTGGATTTTAAATATGCTTGTGATAAGTGTGATAAGTCTTTTGCCCAGGAATTCCTTTTACGTCTTCACAAAGTATTGCATGAAGGCACAGAAGAAGATTTTCCTTGTACATATTGTGGAAAattTTTCAGGAATGCCGCATTTCTAAAAAGACACGTCAACATTGTACACTTgaggaaaaatgaaaaaatatgtgatATTTGTGGCCAAACATGTAGTACAGCCACTGGATATAAATCACACATGAGAAAGCATGAACATGATCCCGTTAAATGTCCAGTTTGTGGTTTACgcttaaaaaatcaacattgtttAAAGAGACACTTAAAAGTGCAACATCCCGAAGGAGGAAAAAAACCTTACCCCTGTTCCTTGTGTAAACACGTTGCGTACACAGCTAAGACGTTAAGAAATCATGTATATTATATGCATGAAAAGAGTTACGACCATAAATGTACCATATGCGAAAAGGCTTTTAAAACTTCAAAAGCTTTAAGGgaaCATCTGGCTACTCACACTGGAGACAAGTTGTATACTTGTAATTTCTGTCCAAAGGCATATAATTCTTTTAGCAATTTGGTTTCTCATCGCAAAAAACTTCATTCTAAAGAGTGGGAGGAGGAAAAGCGTAGAAAATACtactaa
- Protein Sequence
- METCLLCLEVNRDNDKDYIEANSPLWKSLNITTILEQHFWPLETLSTNSWLCSSCWEKLEDFHNFYLHVEEAHMVFVTMKTEETPEVLESKGEIVHKEDNEQTLSKLEVEIVTDPNTLQILKNEGTLNRKIEATKKNREVIDFTEDVEESDINETIVDTYIECDAMENIDNDSDITENSPTDINETIDEIENNNETIEPRDENISEVNENIEISTSDLELMEQELNDSKIESDLEEDFDINNSVDCQQDKNLPENCKFLDSRNSQEDDEYIEKHMKEILCDLCETKLEDFNAMKRHFHTVHNQKGYIQCCYKKYYHRGHLADHLRWHLNPEFFKCLQCGKNLSDRSNLRNHIIRVHRPSNVDFKYACDKCDKSFAQEFLLRLHKVLHEGTEEDFPCTYCGKFFRNAAFLKRHVNIVHLRKNEKICDICGQTCSTATGYKSHMRKHEHDPVKCPVCGLRLKNQHCLKRHLKVQHPEGGKKPYPCSLCKHVAYTAKTLRNHVYYMHEKSYDHKCTICEKAFKTSKALREHLATHTGDKLYTCNFCPKAYNSFSNLVSHRKKLHSKEWEEEKRRKYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -