Chom010083.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01003040.1:396746-398609[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.018 0.91 10.0 0.9 2 14 3 15 2 16 0.90 2 10 8.3 4.3e+02 1.6 0.1 5 16 34 45 32 47 0.86 3 10 0.001 0.054 13.9 3.3 2 23 300 322 300 322 0.95 4 10 0.012 0.63 10.5 0.0 2 22 330 350 329 352 0.88 5 10 9.1e-06 0.00047 20.4 3.1 1 23 371 394 371 394 0.97 6 10 2.5e-05 0.0013 19.0 1.8 1 23 419 441 419 441 0.96 7 10 4.3e-06 0.00022 21.4 1.1 1 23 447 469 447 469 0.96 8 10 2.1e-07 1.1e-05 25.5 1.6 1 23 475 497 475 497 0.98 9 10 2.9e-06 0.00015 22.0 2.8 1 23 503 525 503 525 0.98 10 10 0.0063 0.33 11.4 1.8 1 19 531 549 531 555 0.94
Sequence Information
- Coding Sequence
- ATGTCTAAATGTAGTATTTGCCATAAAACCTTTACCCAAGAGAGTGGGACATTTTTCATTGTGCCCAAAGATGAGAAGAGACGAAAGAAATGGAGTGCAATTTGTAGTAAACAGTTTTCCAGTAATGATCGTTTATGTGTTGAACACTTTTCCTCATCAGATATAATAAAAGAACATAATACTATAACATTAAAATCCACCGCTATGCCCTTAACTGATAGAgatgaagaaaatattgaaaatcctTTAAGAGGaGAGAATTTAGATTCTTCCCAAGAATCTATTaagaataatgaaaaagaaaggGCGAAGCAAAAATGCCGCTGTTGCACAAATCcttcagaaaatttcataaaactggATACTTTTATTAAATCCACAGATGCAATGGAAAAAACTTACAAGGATTTTTTAtacgaaatcactaaacttaatCTAACAACTCATCAGGAATATAATATGCCTCAACAAATCTGTCAAAAATGTGGTAACcaactaaaaaattcatacaaatttgTACAACAAGCTTGTAAAGTTTCTCAACTATATGTGAAACAAATGGAACAACAAAATTCTCTAGAAGATGTTAAACATATTGAACATTTACCCGAAACTCtaattgaaatgaaacaaaCAGAAGAACCGCTTAAAATTGAACCTTTTGATATTGACTGTAATATAGaaataaaggaagaaaaaatggaaaccACAGAAGTGTTAATACCAATAGCAGATCTCAATGAAGAATCAATAGAAGAAAGagattttttaaataattccaataCCGAAGAACAATCATTATCCTCTTCATCATCTTCCGAGGACCATGAAGATTCCGATGAACCAGAATCAATTAAAGAAtatgatattgaaataaatgataaatCTTTAGCCAGATCTTGTGATATATGccacaaaatatatagaaatcaaaaatttcttaatatccATAAGCGCTATACCCATATGCCGGAAGAGGATAAACTACCTTGTCCTTTATGTAGTTATAAAGCTAGTCGTTCATCAGCTTTAAAAGTGCATGTGGGTTTGGTACATGGTCAAGATAAAGTTCAAGAACATTTTAAACCTATTTTAGATTTGGGCAAAGAACATCCCTGTAATTTATGTACTCGCTCGTATGGACGTAAAGATAGTTTACGTAAACATATTAGAACAAAACATTCAAATAAACCATCAAAAGAGGAAGATGCACCCAAAAAGAGTAAACCTCCCAAACAAAAGGATAAGGAGCGTTTTCTTTGTACATATTGTGGTCAATCGTACAGTTCCAAATGTGGTTTAGAAAGTCATATTCTTACACACACAGGAGAAAGACCATTTTCATGTGATATTTGCAATAAGACTTTTAAACGCCTCAAGGATTTACAATTACATCGTGTGATACATAGTGATGAGAAGCCACATCAATGTTCGGAATGTGGTAAAGGTTTTAAACGTGTTGATAAGTTGAAAATTCATATGCGTGTTCATTCCGAATTGCGACCATATAAATGTAGTGAATGCGAAAAAACGTTTAAGTATCCCAGTGTATTAAAAACTCATATGCATATTCATACAGGACAAACACCGTTCGCGTGTAAAACTTGTGGTGAAGCATTTTCATTAAGAACTTCCTTAAATAATCATTGTTTGAAAAATGgtcatgtaaaataa
- Protein Sequence
- MSKCSICHKTFTQESGTFFIVPKDEKRRKKWSAICSKQFSSNDRLCVEHFSSSDIIKEHNTITLKSTAMPLTDRDEENIENPLRGENLDSSQESIKNNEKERAKQKCRCCTNPSENFIKLDTFIKSTDAMEKTYKDFLYEITKLNLTTHQEYNMPQQICQKCGNQLKNSYKFVQQACKVSQLYVKQMEQQNSLEDVKHIEHLPETLIEMKQTEEPLKIEPFDIDCNIEIKEEKMETTEVLIPIADLNEESIEERDFLNNSNTEEQSLSSSSSSEDHEDSDEPESIKEYDIEINDKSLARSCDICHKIYRNQKFLNIHKRYTHMPEEDKLPCPLCSYKASRSSALKVHVGLVHGQDKVQEHFKPILDLGKEHPCNLCTRSYGRKDSLRKHIRTKHSNKPSKEEDAPKKSKPPKQKDKERFLCTYCGQSYSSKCGLESHILTHTGERPFSCDICNKTFKRLKDLQLHRVIHSDEKPHQCSECGKGFKRVDKLKIHMRVHSELRPYKCSECEKTFKYPSVLKTHMHIHTGQTPFACKTCGEAFSLRTSLNNHCLKNGHVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00350226; iTF_00350416; iTF_00350224;
- 90% Identity
- iTF_00350226;
- 80% Identity
- iTF_00350226;