Chom004790.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01003039.1:83951-86402[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 1.4 9.4 3.0 1 23 64 87 64 87 0.95 2 12 0.00026 0.013 15.8 1.8 2 23 103 125 102 125 0.92 3 12 0.003 0.15 12.5 1.1 1 23 128 151 128 151 0.96 4 12 0.012 0.64 10.5 4.4 2 23 165 187 164 187 0.91 5 12 0.00035 0.018 15.4 2.4 1 23 227 250 227 250 0.98 6 12 0.002 0.11 13.0 0.9 1 20 259 278 259 280 0.96 7 12 5e-06 0.00026 21.2 1.1 3 23 414 434 413 434 0.98 8 12 0.96 50 4.6 0.5 1 23 441 466 441 466 0.87 9 12 1.2e-05 0.00061 20.0 1.3 1 23 471 493 471 493 0.97 10 12 3.6e-05 0.0019 18.5 3.3 1 23 499 522 499 522 0.96 11 12 3.3e-05 0.0017 18.6 0.6 1 23 527 551 527 551 0.95 12 12 0.00022 0.011 16.0 5.5 1 23 556 579 556 579 0.95
Sequence Information
- Coding Sequence
- atgctACAAATTAAAATGGAACTACCCACTGAATATAATAGTGATAATGagttattagaaataaataaaacatcttCTTCGCATGATGACCATAATCACATCAATGAAATTCAAGTCGAAAAAGAAACAATAAGTGAAAATGTATTTACCGTAATACcaacattaaatcaaaaatttaaaactgcaaTCTTTCAATGTGAATTCTGTGATCACAGGCTGCCCACTAAGAATGCTCTCTACAAACATCGTGTGCgtaaacataaaaatcaaaagcccttcaatcgaaaatttctaaaatctttgttaaattgtaatttatgtgGAAAAACTTTCAACGATTTACCTTCATTAAAACAGCACAAACACAATGAACACTGGTTATATGCCTGTGAATACTGTGGTCATAAAGTACCCACAAGAAATGCTTTATCACAACATCGATTAAGAAAACATCGTGACcctgagaaaacaaaaaagaaaatattacaattaaaatgttcTCAGTGTTCAGAATGTTTTAATACAAgagaaacattaaatttacataaaacacaaaaacatgagagaacaattttagtgaaattagaATCCAGAACAGAGGTTAAACGTGAAGATAGTTATAGTGATCAGCTGGTatctaaaattaatgttttaacaaaacatcgtaataaaaaattttataaatgtgaaGATTGTGATCATAAAGTACCTACGAAAAATGCTTTGTCACAACATCGTCGCCGAAAACATCGCAACAAAACAGGAAATGGGGCATTTAAATGTGAAGAATGTGATTATCGATTGCCTACGAAAAATGCTTTATCCAAACATCAAACACACGCGCGTCTTCCCCTGTCCGCCACTACAGTTAATAATCCTGaattacaaaatttcgttttcatAAATGCTCCAGACTTTTATGCAAATgttcaaaaatatgaaacaattctaACCGAAGAAACACTAATCGTAGAAGAAATATCACAAGATGCCACCGAAAAATGGTTAGATACCCTCAACTATATCGATACAAAATCAATATCAAATTCAGATACAAATataacaatgaaaattaaagaaataccTCAAGATAATGTAACAATAGAAATATCAAAGACTGATGAAAATGCACAAGAAACTTTAGTTACTaagatatctgaaaaattgcCAACAAACTATATAACTAAATGCCCCACAAAAACCTCTAAAACTTTAAGTAAACAAGAGAGAAAcagtttttgtgaaatttgcaAAAAGTCCTTTGTATCATATTATAAACTAAGTTGGCACATGCGTATGCATGATAAAAATCGTAAACGTTTTGTTTGCCCCATTGAGCTATGTGGTCGTATATATGCCTCAAAACAAGCCTGTGATTTACATTATCGTCAAACCCATTTGGATGATGGTTTCATATGTtcaatttgtcataaaatatttcctaCCAAACAAACTCTTGAGGTACATGTGCGTTATCACAATCGAGAATTTCCCTATCAGTGTAATTTGTGTGAGAGAAAATTTGCCCAAAAAGGTCACTTGACACATCATGTAGAAGTAAAACATCaaaatttgagatatttttgCACGGAACCAGATTGtggtaaaatatttcaaactagTGTTTCGTTGAGAAATCATCAATATACCCACACATCGATGCCATTTAAATGTAATCATTGTGATAAAGCATATCCACAAAAGAATAAattaagaTCTCATTTGTTGCATAAACATAATTTGGATTTATCTTTAGACGATTTAGAGTCTATGCgtcaatttaatattatacGAACGCGTCATGCCTTCGTTAAAGTTCAAACTGAACCTGTTAAACAATCAATTAATATTTCCAGTTCAAAGAGTACTTCCTCAAATGTACAAGAGGATATAATCTCACATTAA
- Protein Sequence
- MLQIKMELPTEYNSDNELLEINKTSSSHDDHNHINEIQVEKETISENVFTVIPTLNQKFKTAIFQCEFCDHRLPTKNALYKHRVRKHKNQKPFNRKFLKSLLNCNLCGKTFNDLPSLKQHKHNEHWLYACEYCGHKVPTRNALSQHRLRKHRDPEKTKKKILQLKCSQCSECFNTRETLNLHKTQKHERTILVKLESRTEVKREDSYSDQLVSKINVLTKHRNKKFYKCEDCDHKVPTKNALSQHRRRKHRNKTGNGAFKCEECDYRLPTKNALSKHQTHARLPLSATTVNNPELQNFVFINAPDFYANVQKYETILTEETLIVEEISQDATEKWLDTLNYIDTKSISNSDTNITMKIKEIPQDNVTIEISKTDENAQETLVTKISEKLPTNYITKCPTKTSKTLSKQERNSFCEICKKSFVSYYKLSWHMRMHDKNRKRFVCPIELCGRIYASKQACDLHYRQTHLDDGFICSICHKIFPTKQTLEVHVRYHNREFPYQCNLCERKFAQKGHLTHHVEVKHQNLRYFCTEPDCGKIFQTSVSLRNHQYTHTSMPFKCNHCDKAYPQKNKLRSHLLHKHNLDLSLDDLESMRQFNIIRTRHAFVKVQTEPVKQSINISSSKSTSSNVQEDIISH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -