Chom012202.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01002278.1:578329-580135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8e-05 0.00093 19.5 2.3 1 23 116 138 116 138 0.96 2 11 5.4e-06 0.00028 21.1 2.1 1 23 144 167 144 167 0.97 3 11 6e-05 0.0031 17.8 0.4 1 23 173 195 173 195 0.97 4 11 6.1e-05 0.0032 17.8 2.7 1 23 201 223 201 224 0.95 5 11 1.5e-07 8e-06 26.0 0.6 1 23 231 253 231 253 0.98 6 11 0.0074 0.38 11.2 4.9 2 23 260 282 259 282 0.94 7 11 0.041 2.1 8.9 0.2 3 23 290 309 288 309 0.95 8 11 5.7e-06 0.0003 21.0 0.9 1 23 315 337 315 337 0.99 9 11 0.0071 0.37 11.3 5.2 1 23 343 365 343 365 0.99 10 11 0.021 1.1 9.8 1.1 1 23 371 397 371 397 0.84 11 11 5.3 2.7e+02 2.3 0.8 1 20 403 422 403 424 0.83
Sequence Information
- Coding Sequence
- atgatacGTAGCCGCCGTTCGATATCAAAAGAAGATGCTTCTTCTGTTTTGGCTGACAGTGGTATATCACTTTCATCACCCCCCGCTAATCGCAAACACTTTCCTCATCTCAATGAGGATGAGGAAGAAGTCCTATTGGGAAAATTATGTGTAACAGATGATGAAGATCAAaatcataatgatgatgatgatggggAAGATGATACAGATCccgaaataatagaaattaatacGGTTGAAAAGGTTGTTATCAGCGAAGATGATGAGGAAGAGGAATCTAATGACTCTTGTaagaaatttaaagtaaaagcCAATCAGCCGGCAGCTAAGAGATCACGTAAAAGTTATATATGTGATGTTTGTCACAAAGAATTTCGCGGTAAATCCGATTTAACACGCCACAAGTTTGTGCACACCAATGAAAAGCCTTACAAGTGTGAAACGTGTAATAAATGTTATCGCCAAGAAATTAATCtgaaaaatcatattatttcGGCTCATACCAAGAAGAAGGAATTTGCCTGTGGCCAGTGTCCTAAAACTTTTGCTCTTAAGGAGAGATTACGACTGCATATGCGTTTGCATACCGGAGAAAAGCCTTATGCCTGCCAACAATGTGATAAACGTTTTGCCAGGGGTGGCCAAcTTCACCAACATATGGTTACACATCACCACGATGCTcccaaacaatttaaatgtgaaaaatgttCAGAGCGTTTTTCAACACCCTCTAATTTGAAAGCTCATATTCAAGGTCATGCAGAAACGCCTGattgtttttgtgaaatttgtaaaaaacatTTTGCCAATGATGTGCTTCTCAAAGCACATATTCATAAACTACATTATAAACTTAAACAACTGGATtgtgatatttgtaaaaaaCCCATCGAAGAAAATGATTTGCAAAGTCATATGAAAACTCACAGTAATATCAAGACTTATGTATGTGAAATATGTAATTCACTGTTTACCCAAAAATCCCAATATAATGTACACATGCGAATGCACTCTGGCGAAAGACCCTTTCAGTGTAGAATATGCTGTCAAACATTTGCCCATTCTAGTGTTTTGAAGCTTCATATACGTAAACACACGGGTGAGAAACCCTTCAATTGTTTGCTGTGCAAAAATGATGAAGTGGCCTTTTCTCAACTTGCTCATTTAAAAACTCAcatgaaaaaaattcacaaacaaTTAAAACCCTACATGTGTGAGGGCTGTcatgatttctttaaaattaaaattgacctAGAGTTTCACcagcaaaaatgtaaaaaatacacCACTAGTGTTGAAGATCAAGAGGCACAATATAATGAAACGCAAACCTTAACGCATATACGTTTTCTTATGgccattttattaaagaaaatctcaTCTGAACAAAAGCTTCAACAATTGGGATTTGAAAAACGTTTAATAGATAATGTAGTTATAGCTGCTCTTAAGGTAGCCAATCGCAAATTCTATGATGACTTAAAGTTATCTTCTCTAGAGAGAATGCGTTTAAATATAGAAGAATTTCTTAACTGGATTGTACCCGCCAAAGTAATGGAAAAGTTTCGTGAACAAAATCAAAGTATAGaagatattttggaaaaaattgtctCCATGTATatgaaacaaaagtaa
- Protein Sequence
- MIRSRRSISKEDASSVLADSGISLSSPPANRKHFPHLNEDEEEVLLGKLCVTDDEDQNHNDDDDGEDDTDPEIIEINTVEKVVISEDDEEEESNDSCKKFKVKANQPAAKRSRKSYICDVCHKEFRGKSDLTRHKFVHTNEKPYKCETCNKCYRQEINLKNHIISAHTKKKEFACGQCPKTFALKERLRLHMRLHTGEKPYACQQCDKRFARGGQLHQHMVTHHHDAPKQFKCEKCSERFSTPSNLKAHIQGHAETPDCFCEICKKHFANDVLLKAHIHKLHYKLKQLDCDICKKPIEENDLQSHMKTHSNIKTYVCEICNSLFTQKSQYNVHMRMHSGERPFQCRICCQTFAHSSVLKLHIRKHTGEKPFNCLLCKNDEVAFSQLAHLKTHMKKIHKQLKPYMCEGCHDFFKIKIDLEFHQQKCKKYTTSVEDQEAQYNETQTLTHIRFLMAILLKKISSEQKLQQLGFEKRLIDNVVIAALKVANRKFYDDLKLSSLERMRLNIEEFLNWIVPAKVMEKFREQNQSIEDILEKIVSMYMKQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01314024;
- 90% Identity
- -
- 80% Identity
- -