Chom005607.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01003483.1:24095-28716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.015 0.79 10.2 0.1 3 23 39 59 37 59 0.96 2 16 0.0056 0.29 11.6 2.2 1 23 65 88 65 88 0.93 3 16 0.35 18 6.0 0.1 3 23 93 115 92 115 0.85 4 16 0.0038 0.2 12.1 0.1 1 21 123 143 123 144 0.94 5 16 4.4e-06 0.00023 21.4 0.9 1 23 152 174 152 174 0.97 6 16 0.00012 0.0064 16.8 3.5 1 23 180 202 180 202 0.98 7 16 0.00032 0.017 15.5 3.4 1 23 208 230 208 230 0.95 8 16 0.018 0.93 10.0 1.4 2 21 237 256 236 257 0.95 9 16 0.71 37 5.0 0.2 2 23 706 728 705 728 0.94 10 16 0.32 17 6.1 0.6 1 10 752 761 752 774 0.79 11 16 0.6 31 5.2 2.3 1 23 782 806 782 806 0.92 12 16 0.14 7.2 7.2 0.3 2 21 846 865 845 866 0.91 13 16 0.00021 0.011 16.1 0.9 1 23 874 896 874 896 0.98 14 16 6.6e-06 0.00034 20.8 1.8 1 23 902 925 902 925 0.97 15 16 6.9e-05 0.0036 17.6 1.3 1 23 931 953 931 953 0.98 16 16 0.00044 0.023 15.1 1.1 1 21 959 979 959 980 0.95
Sequence Information
- Coding Sequence
- ATGGCTGATGATTCGGAAGTAGCTCCCTCCTCTTCCTCAACGGGGGCCAATTCTACTGCTGCTGATCAAGCCATGTTGGTTAAACTGTCTACAGATGGTGTACCCAAACTTTTTTGTCCGGTGTGCAATAAAGCTTTGGTATCTTTAGCGGGTTATGTTAAACATGTTAAAAAACATGAACCTCCTGGAGGTTTCCTATGTCGCTATTGTGAAGCCCGGTTTTGTAGCGAAGAAGATCTGAAAAAACATCGTGAATCCGAACACACTACTATAGCATGTCGCCTATGTAAAGATGTTACCTTTACCAACGAGGATGATTATCGTGTCCATATAAGAGACATTCATCAGGGCGTGGATAGAGAATTATTTACTTGTGAAAAATGTGGTGCCACTTATAAAACTATAGATCCATATCGCCGTCATATAGATACAGAATGTGGTCGCATTAAACCCTTCAAATGTGATAAATGTCCCATGGCATTTGTtacgaaatataatttaaaacagcATTTGGAAAATCATTCGGGAGAgttgaaattttgttgtagCTACTGTGGCAGGAATTTTAAGCAGAAGGCTCGATTGGTGGAACATGAAAGGACACACACGGGAGAGAAACCTTATAAATGTGATGTTTGTGGTAAATGTTTTTCTCATCGTGAGAGTATAGTCACCCATTCCTCCATACATACGGGTATACGTTTGGTAGAGTGTAAAGGTTGTGGTTCACGTTTTTCTTGCTATTCCAATTTGATTAAACATCGCCGTAACAGACGTGATACATGTGGTCTGCCCCAGTTTGATCCGCCTCGTAATCGTATCAGAAAACATACTTCAAGAATTCCTGCCACTTTAAATCCCACATCTGAAATTAAAGTggttaatgttaataaaatcattaaaccCGATGATAAAGAAAAAGTGGCCGCCCTGAAAAAGGAATCAAGCGAAAAACCTCTGAAACTTAAAGCTACTGCTCGAAAACGTACCGGAGGACCTCGACCTCTCCGTAATCTTGCCCCAACCACATCAGAACCTCCTACTTTACGCAAAAGAAGTCCTAGAAAAAAATTACCCCAATTGGTTAATTTAGAAGATGAAGATGATTACAAAGTGGAAGACGATTTCGAAGGGGATGACGAAGATGAATATTTGCcctttaaaacgaaatctaaaaGCGAATTTAAATCTATGGAAGAGAACAGTATGCCGCCTTTGCAGCCAGAAATTGTTATGGCTGATAAATCTTTACAAAATCCTTCAACTACTCAGTGGTCAGATGATAGTGAAGATGAATATGTGCCAGATTTTGAACCAGCTGATTCAGATTCAGAGGATGACAATGATAAAGAGGCAAACGATTTTAAATTACCTTTGCCAGCCGTTAGCATAAAACAGGAAAAGTATGATGAGGAACAAGAGGATATAGAGGCCATAACAACTAACATACAAATAGAACCCTTAGGAGATTTTGAATATACCTTAATGGATAGTTACAATGCCGAGATCAAATATGAACATAATGCAGATGATGAAGAGGAAGAGGAGAATAATTTATTTGAGGAAAAAGATCGCATCTTAGAGCATTTACTAAATGAAAATGATTATTCACATTTGCCGGAAGTAGCGGAGCAAAAACCTaaagaaactaaaagaaaaagaaggcGTAATATGACTTCAATTGATTCCCACCGTAACTTAATGGATACggaagatattttaatggaaacaGAAGttgcttttattaaatatgaagaCAGTGATGAACAGGAAGAGCTTTATGAAGATTTATTAGAAGAAAAACCCGAGCTTCCTGTGGTAACCAAAAAAGACCTAAAAGATTGCCATGTTTTACTGGAGGATATCACACATTGTTTCCCCTCCCTTAAAGATGAGTCAACCGTTAGGGTTCCCCGTAATGTACAGCCTTTCTTTTCCAAATCGGAGAAAGTTaaaaaactgattaaaaaaCGTGGCAAATATCGTCCCCGAAAACCTAAAACAGAACCCAATTCTGATGAAgattcaaaatctaaatcgtATCGTTTAGCTTCCATCTCATCGAAACAACTTAAGGAACGCATGAAACTGCTAAGAAAACGTGATAAATCTTGGCAATGTCCTGAatgtataaaaatctattatatGCGTAAACCTTATGAAAAACATTTACGAGATGATCATAAAAAATCtgaagattttattaaagaaatctttaaaaatgatttggaAGAAGTTAAAACCGATGATGTGTTCAAGTGTCATATTTGcgataaaatctatttaatggAGAAACGTTTACTTTCTCACATACCCAAACATGGACCAGATGGCACACTCATACATAAATGTCCCTGCTATTGTACTCTATATTTTGCTACTCGCGAGGAGGCCACCGCTCATGCCCAGGATAAACATAAAGAAATGTTATGGTGTGaattatgtgaaaaatatatgacAGGATGTGATGCCCTCAAATCGCATAAGGCTCGTATACATGGTGGCAATAAGGATTACAAGAATTCAAGGAATTTGGTGTGCATGAAATGTGGCAAGAAATTCTTAGGACGCACACAACTTACTGATCATGAGAGATCGGATTGTGGTCGTTTGCCTTTGTATCAGTGTCAGGAATGTGGTAAATGTCTAACAACAGCAGGCATTTTGAAAACGCATATGTTATTGCACAGTGATGCTCGACCCTATCAATGTGATAAATGTGGCAAAACTTTTAAGATTAAAGCACAGTACAAGACGCATATAAAATATGCTCACACCGATGAGAAACGTTTTAAATGTCATCTCTGTCCCAAAGAGTATCCATATCGTGAGAGTTTACTAACTCATATGTCTGTACACACTGGCATTAAACGTTTCATGTGTAATGGCTGTGGTAAACGTTTCACTTGTGTTTCTAATCTCCAGGCCCATCGTAAAGTACAAGCAGAAACTTGTGGCCTTTTACCTCTAAATGCCAAGGCCACGCAGTATATGGGCGTACAAAAAGGTAATCTTTTAATGGGTGCTAAACCTGAACCCGGTTTGGATTATGTGGAAACCAGAACTTTTGTTGCCAAAGAGGTCATTACCCATGATTTGCCCATGGCCCAAGAGCTACACAATCAATCGCGTAATATGCCTCAAGATAACTCCATAAGTGATGGCATTCCTCTCAACTATGTCACTTCGGGTTCCGAAATTATCTTAATGTATAATAGAGATTAA
- Protein Sequence
- MADDSEVAPSSSSTGANSTAADQAMLVKLSTDGVPKLFCPVCNKALVSLAGYVKHVKKHEPPGGFLCRYCEARFCSEEDLKKHRESEHTTIACRLCKDVTFTNEDDYRVHIRDIHQGVDRELFTCEKCGATYKTIDPYRRHIDTECGRIKPFKCDKCPMAFVTKYNLKQHLENHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKCFSHRESIVTHSSIHTGIRLVECKGCGSRFSCYSNLIKHRRNRRDTCGLPQFDPPRNRIRKHTSRIPATLNPTSEIKVVNVNKIIKPDDKEKVAALKKESSEKPLKLKATARKRTGGPRPLRNLAPTTSEPPTLRKRSPRKKLPQLVNLEDEDDYKVEDDFEGDDEDEYLPFKTKSKSEFKSMEENSMPPLQPEIVMADKSLQNPSTTQWSDDSEDEYVPDFEPADSDSEDDNDKEANDFKLPLPAVSIKQEKYDEEQEDIEAITTNIQIEPLGDFEYTLMDSYNAEIKYEHNADDEEEEENNLFEEKDRILEHLLNENDYSHLPEVAEQKPKETKRKRRRNMTSIDSHRNLMDTEDILMETEVAFIKYEDSDEQEELYEDLLEEKPELPVVTKKDLKDCHVLLEDITHCFPSLKDESTVRVPRNVQPFFSKSEKVKKLIKKRGKYRPRKPKTEPNSDEDSKSKSYRLASISSKQLKERMKLLRKRDKSWQCPECIKIYYMRKPYEKHLRDDHKKSEDFIKEIFKNDLEEVKTDDVFKCHICDKIYLMEKRLLSHIPKHGPDGTLIHKCPCYCTLYFATREEATAHAQDKHKEMLWCELCEKYMTGCDALKSHKARIHGGNKDYKNSRNLVCMKCGKKFLGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHSDARPYQCDKCGKTFKIKAQYKTHIKYAHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAETCGLLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKEVITHDLPMAQELHNQSRNMPQDNSISDGIPLNYVTSGSEIILMYNRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261217;
- 90% Identity
- -
- 80% Identity
- -