Chom015080.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01001667.1:399859-402939[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.027 1.4 9.5 0.3 2 23 198 220 197 220 0.93 2 15 0.028 1.4 9.4 8.2 1 23 223 245 223 245 0.96 3 15 2.5e-05 0.0013 19.0 0.1 1 23 250 274 250 274 0.97 4 15 0.0013 0.068 13.6 0.6 1 23 280 304 280 304 0.95 5 15 1.7e-05 0.00086 19.6 0.2 1 23 310 332 310 332 0.98 6 15 0.0002 0.01 16.2 0.0 1 23 338 360 338 360 0.98 7 15 0.0014 0.074 13.5 2.0 1 20 366 385 366 387 0.87 8 15 0.2 11 6.7 0.9 2 23 418 440 417 440 0.94 9 15 0.024 1.3 9.6 2.9 1 23 531 554 531 554 0.93 10 15 0.0012 0.062 13.7 4.9 1 23 557 579 557 579 0.97 11 15 7.1e-05 0.0037 17.6 0.3 1 23 584 608 584 608 0.96 12 15 4.3 2.2e+02 2.5 0.2 1 23 630 652 630 652 0.87 13 15 1.2e-05 0.00061 20.0 0.2 1 23 658 680 658 680 0.97 14 15 0.014 0.71 10.4 0.1 1 23 686 708 686 708 0.96 15 15 2.5e-06 0.00013 22.1 1.9 1 23 714 737 714 737 0.98
Sequence Information
- Coding Sequence
- atgTCAAAAATCCTAACGCCCACAATTCCATTTTCTGCTCCTCTAACTAAATGTggtgaaatattttatcaagATTTTAGTGCTTTTTGCATGTTTTGTACATTTTGCGAAATGAGATTCTCTTGCTTCGAAGAATTCCTGGGACACgtacaaaatattcatttagtaaattatctaaaaacaaaaattaaaactgagctAACTGAAACAGAAATTTCTTGTCGTGAAAAGGAATCATTAAAGGATTTAAGGAAACCAAATGTGGAAGGAACACCTTCAGAGGAACAGTGTTCTAGTGCCGAATATCAACAACAAATTCAACCACAAGCACAAAACTTAGAATTAGAAAGTTTTTTAGAAATAGATGTTAAAACTGAAGAGGGTATTAATGATGAAGACAAGCAGTTTATGAAGTTAGAATGCAGTAACTTTGAGTCTGAAAATTTCTCTAGTGAAGAAGAGTTATTGACCGACTTAAAGAAACCTACAAGGAAGAGACGAAAGACTAGTGAAGAAGATGATTCAGATGAATTTGAAATGCAGTTAGAATTCACCAAAACTAAAAGAATTCATAGAGCACATGATTTATTATCCTGTTCAGAATGTGAACAAAGGTTTCCCTTTAGAAAAGATATGGATCAGCACATGCTTGATTGGCATAATGGTTACAAATGTTCCCACTGCGACAGCAGGTTTCGTTTAACACATCATCTCCGCAGACATGAACTCTTGCACAACAACGAAAATTTCCCCTGTCCCAAAGAGAATTGTGGAAAAGTATTTAAAGCACCTCAATACCTAAAACGTCACTTAGAAGTCCATACTTTGCCGCAAACTTTTGTAtgtgaatttgaaaattgtggTAAAGCTTTTGAAACACAAAGACGTCTTAATACCCATAGCAAGGCCCATGCTGgcgaaaaagcttttatttgtgaaatttgtgaCAATCGTTTTGTAACAAATGCCTATTTAAAACTGCACATGGCAACACATTCAAATATCCGGGAATACGTTTGTGAGATTTGTCAGGCAGCTTTTGCCAAACCTGGAGTATTACAAAGGCATATGTTTATACATTCtgataagaaattatttcagtGTAAATTATGTgataaatcatttaaacaaCCCCACGGTTTGGATTGTCATATTAAtatgttaaaaattttaacacctacaaatttattttcgtcACGTCAAACAAAATGTGGCGAAATAttctatcaaaatttcaataaattctttatggtttgtacattttgtgaaatgaaattttttcaatacgaagaattttttctgcatgtacAAAATACTCACTTAGAAGATTGTCTacaaatagattttgaaaatgaagATGAAATGGATAAAGCAAACGATGAACACTGTGTTGATGAGGAACATTTAATTGAGGATAGTAACCTAGAGGAAGAAAACTCTTCTAATGAAGAGGAACTCTTAACAATATTGCAACATTTTAAAGGAGAATATCATGcaaatgaagaaaacaaaatcacaaatgaagaaaaattagaaaCGCAGTCCCCACAACCAgcaaaatcaaagaaaatccCTAAAGCACCAGTAGTATTTACCTGTTCAGATTGTAAACAAacttttccatatagaaaagtTCTGGATGAACATATGTTTGAATGTCACAACGGTTATAAATGTTCGCTATGTGATAATAGGTTTCGTTTACCACACCACCTCCGAAGACATGAACAGTTACACAGCAGTGAAAAATTCGCTTGTCCCATAGAGCAATgtggaaaattatataaatctccTGAATATCTAAAACACCACATGGAAGTTCATACTTGTCAAAAACATTCGTCCCATGGTGGAGAATTTAGTACAAAACGTAGAAAAAAGAATGCATTTGTATGCGATAGTTGTGGTTTAGTATGTTGGTCTAATGCTATACTATCTAGACATCTACTTTTACACACTGGTGAAAAAGCGTTTGCTTGTGAAGTTTGTGGGAAACGTTTTGCTTTAAAAGGTTATTTAACACTGCATATGGAAAGACATAAGAATAATCGTAAATATGTATGTGGTATTTGCCAGGCCGGTTTTAATTCATCCGATATATTACAAAGACACAAGTATATACATTTagataagaaattatttcagtGTAAATTATGTgataaatcatttaaacaaCCACACGGTTTGGATGGTCATATGAGACGTTTACATATGGAACCTAAAGAAAagaaagatgaaaataaattggaaatatttcgGTCATAG
- Protein Sequence
- MSKILTPTIPFSAPLTKCGEIFYQDFSAFCMFCTFCEMRFSCFEEFLGHVQNIHLVNYLKTKIKTELTETEISCREKESLKDLRKPNVEGTPSEEQCSSAEYQQQIQPQAQNLELESFLEIDVKTEEGINDEDKQFMKLECSNFESENFSSEEELLTDLKKPTRKRRKTSEEDDSDEFEMQLEFTKTKRIHRAHDLLSCSECEQRFPFRKDMDQHMLDWHNGYKCSHCDSRFRLTHHLRRHELLHNNENFPCPKENCGKVFKAPQYLKRHLEVHTLPQTFVCEFENCGKAFETQRRLNTHSKAHAGEKAFICEICDNRFVTNAYLKLHMATHSNIREYVCEICQAAFAKPGVLQRHMFIHSDKKLFQCKLCDKSFKQPHGLDCHINMLKILTPTNLFSSRQTKCGEIFYQNFNKFFMVCTFCEMKFFQYEEFFLHVQNTHLEDCLQIDFENEDEMDKANDEHCVDEEHLIEDSNLEEENSSNEEELLTILQHFKGEYHANEENKITNEEKLETQSPQPAKSKKIPKAPVVFTCSDCKQTFPYRKVLDEHMFECHNGYKCSLCDNRFRLPHHLRRHEQLHSSEKFACPIEQCGKLYKSPEYLKHHMEVHTCQKHSSHGGEFSTKRRKKNAFVCDSCGLVCWSNAILSRHLLLHTGEKAFACEVCGKRFALKGYLTLHMERHKNNRKYVCGICQAGFNSSDILQRHKYIHLDKKLFQCKLCDKSFKQPHGLDGHMRRLHMEPKEKKDENKLEIFRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -