Chom004695.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- -
- Assembly
- GCA_004302925.1
- Location
- PYHX01001118.1:790975-801147[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.1e-08 4.2e-06 26.8 1.4 2 23 119 140 119 140 0.97 2 9 1e-07 5.3e-06 26.5 0.5 1 23 146 168 146 168 0.98 3 9 9.7e-08 5e-06 26.6 0.6 1 23 174 196 174 196 0.98 4 9 5.3e-06 0.00028 21.1 0.5 4 23 207 226 202 227 0.92 5 9 5.4e-05 0.0028 17.9 2.9 1 23 232 254 232 254 0.97 6 9 2.7e-05 0.0014 18.9 3.6 1 23 260 283 260 283 0.98 7 9 8.5e-05 0.0044 17.3 2.1 1 23 289 311 289 311 0.98 8 9 5e-06 0.00026 21.2 1.1 1 23 316 338 316 338 0.98 9 9 0.0023 0.12 12.8 0.3 2 23 345 369 344 369 0.94
Sequence Information
- Coding Sequence
- aTGGAAAGCATTTGTAGATTGTGTTTTCAACCAGCAGcgttgTTCCAAGTACCCGGCTATAATATACCCACCTGTGTAAAGTGTTCAGAACATTTAACAAATAGCGGTAATGGCTTCTATCAGGCAGTAGCTGCTACCGCTTCAGGTCAACCGGCTTTAGCGGCATCGGCAGCTGCGGCTGCCGCTAATAATAGCagtaataatacaacaacaaataatagtaataatacaGCGAATAATTTGAATCAACAACAAATGCCTCAACAACAGCTACAAAACTCCACCAATTCGACTAATAGTCTACAATCGCAGGACGATTCGGAAGAAgtGGACTTGATATTCAATGAAGAAGGCTCTTGTCCTTTAtgcaataaaacattttcaaggaAATCCTCCTTGATAACACACATACGCAATCATGCagctgaaagaaaatttgtatgcaATTATTGTAATAAAGGTTTTACACAAGCGGCCAATTTAAGAAATCATGAGCGTATACACACCAATGATCGTCCTTATGTTTGTGGTGATTGTGGCAAAACATTTACACAGATAACAAATCTTAATAACCATCGACGTTTACATACTGGCGAACGTCCTTTTGTTTGTATTGAACCCGAATGTGGCCGCTCATTTGCCCAAGTAAccaatttaaataatcatatgAAAACCCACCATAAAGTCCAACAATATTGTTGTAATCAATGCCCGAAAAAATTCACACAAGTCACCTCGCTCAATCAACATTTACAGGCTCATGCCGGTATAACCGGTTACTATTGTCCCCGCTGTCCGGAGAAGACTTTCAAACAACAATCCcaattacacacacatatgaaaTCCCATGGTCTACAATATCCATTTGAATGTACGAAATGTGATGAGAAATTCTTACAGCAGGCCCACTTGGAGCAGCATCTTAAAATGCATGatgaattcaaatataaatgcaATATTTGTCCCAGTTCATTTAATCAGGAATCATTACTTAAAAAACATGAACAACGTCATTTAGAGGGCAGgTACCTCACTTGTCCCGTGGCCAATTGTAATGAGGCCTTTGCTGTGCGCCAGCATCtttcaaaacatttattaaatagtCATTCGCATACCGAACTACCGCCTCCAAAACGTTCTAAGAAATGCATAACCTTACAACCGCCTCAACAGCCTGTCACCATGGTTGGCCAGCCCTTATCCCTACAACATGCTCCCCAAC
- Protein Sequence
- MESICRLCFQPAALFQVPGYNIPTCVKCSEHLTNSGNGFYQAVAATASGQPALAASAAAAAANNSSNNTTTNNSNNTANNLNQQQMPQQQLQNSTNSTNSLQSQDDSEEVDLIFNEEGSCPLCNKTFSRKSSLITHIRNHAAERKFVCNYCNKGFTQAANLRNHERIHTNDRPYVCGDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLQYPFECTKCDEKFLQQAHLEQHLKMHDEFKYKCNICPSSFNQESLLKKHEQRHLEGRYLTCPVANCNEAFAVRQHLSKHLLNSHSHTELPPPKRSKKCITLQPPQQPVTMVGQPLSLQHAPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01374271;
- 90% Identity
- iTF_00200070;
- 80% Identity
- -