Basic Information

Insect: Cochliomyia hominivorax
Gene Symbol: -
Assembly: GCA_004302925.1
Location: PYHX01003180.1:950840-952825[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.0055 17.0 4.2 2 23 207 228 207 228 0.97

2 12 7.4e-06 0.00038 20.7 0.7 1 23 234 257 234 257 0.95

3 12 5.8e-05 0.003 17.9 0.0 1 23 269 291 269 291 0.98

4 12 0.026 1.4 9.5 0.9 2 21 297 316 296 319 0.94

5 12 5.5e-05 0.0028 17.9 0.1 1 23 325 347 325 347 0.98

6 12 7.3e-07 3.8e-05 23.8 0.5 1 23 353 375 353 375 0.98

7 12 0.0023 0.12 12.8 4.0 1 23 381 403 381 403 0.95

8 12 7.1e-05 0.0037 17.6 4.2 1 23 408 430 408 430 0.97

9 12 0.00017 0.0086 16.4 1.6 1 23 436 458 436 458 0.95

10 12 2.5e-05 0.0013 19.0 5.2 1 23 464 486 464 486 0.98

11 12 0.00012 0.0065 16.8 0.6 1 23 492 514 492 514 0.97

12 12 0.00076 0.039 14.3 0.3 1 23 520 542 520 542 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.0055	17.0	4.2	2	23	207	228	207	228	0.97
2	12	7.4e-06	0.00038	20.7	0.7	1	23	234	257	234	257	0.95
3	12	5.8e-05	0.003	17.9	0.0	1	23	269	291	269	291	0.98
4	12	0.026	1.4	9.5	0.9	2	21	297	316	296	319	0.94
5	12	5.5e-05	0.0028	17.9	0.1	1	23	325	347	325	347	0.98
6	12	7.3e-07	3.8e-05	23.8	0.5	1	23	353	375	353	375	0.98
7	12	0.0023	0.12	12.8	4.0	1	23	381	403	381	403	0.95
8	12	7.1e-05	0.0037	17.6	4.2	1	23	408	430	408	430	0.97
9	12	0.00017	0.0086	16.4	1.6	1	23	436	458	436	458	0.95
10	12	2.5e-05	0.0013	19.0	5.2	1	23	464	486	464	486	0.98
11	12	0.00012	0.0065	16.8	0.6	1	23	492	514	492	514	0.97
12	12	0.00076	0.039	14.3	0.3	1	23	520	542	520	542	0.95

Sequence Information

Coding Sequence: atGCTATTGGGTCGTATATGTCGAACTTGTTTAAAGAAATCCGCTGGTATGCATAAATTACGTGAATATATACAAGATGTACAAATCGAAGATATGCTTAACCAATCTGTACCTAATTTTGAGTTGGAAATGGAAGATATACCCTTACCGGTGGAGATATGTGAGGATTGTTTGAATAAACTTCAAATAGcatttgattttgtaaaaatgtgtgCCCAAAGTAATAAGGAGCTTAAGAGTATATTAAATCAACAAGAGCAAGAAATTGAAGGTGCATTTGTGTCTGTCTTGGGTGAAGTAAATCCCATGGAAATATCAGAAGAAACTGATATATTaatggataattttaaaaaagaactacACGACGACAGTACTTCTAATCAAATTGTTGGTGAAAAGGAGGAACAAAAAATGGAAGTTGTAAAGCTGGAAATTGAAGTACAAAATGAAAGTCATTATAATGAAGACGCAGTTAGTAGTTCGGATGAATATTGGCCTAATGACGAAAAAGAAGATAGTGACAAcaatttttttgaaagtatgAACAAACCTTCTGCAGATATAAAACCCAAAAGAAAATACCATAGAAAGGTTCCCCTTAAACGTAGTAGCGTTAATACTTGTCTGCAttgcaaaaaagtattttccaaaaaaactttattaaccaAACATTTATCAGTTCACGATCCGGATAATGAGTTTGTGTGCGACATCTGTGGTTATCGTTTTTCCAgtgaaagaaaacttaaaacacATATAAATGGTAAACACAATGATGTAGAATTAAGTTTATCGGATGGTCCTTATCCCTGTCCTGACTGTCCCATGATATTCCAACAAAAAAGGTCTTTGGCAGCTCATCGTATAGTACATGCAGAGAGAGATATTAAATGTCAGGTTTGTGATATGGATCTTAAAACAGTGGCTGCTCTGACACGTCATATGAATTGTAAACACCCTGATGTTTTGCCCTACAAATGTAACTTATGCGAAAAAGCATTTCCGGTAGAAAACCAACTAAATGACCATATTAATGAGCATATGggttataaaaaacataaatgtgATTTGTGTGAAAAAAGTTTTCCAAATCCTTCTGCGTTAAAAGATCATGTACGTGTTCATACGGGCGAATCACCATTTCTCTGTGCCCATTGTGGTAATTGCTTTAAAACGGCCAATGTATTGCGTCAACATTTACAAAGACACGgtgaaaaaaaattccattgcACAGAATGTcccatgaaattttatttcaaagaaaatttaaacaaacacatGACCTCACATACCAAATTGAAACCACATATTTGTGATATATGTGGTTCGGCATTCACTAGATTATATTCGCTAAAGGctcataaatttaaacattccGGTGAAAGACCATTCAAATGTGAGGAATGTAATATgagCTTTGTTTTCAAGCGCCATTTAAAACGTCACAAACTTACACATACCGGAGAAAAGCCTCATATGTGTACTTTTTGTGATCGTGCTTATGCCGCTAGTGGAGATTTAGTTAAACATTTGCGTACCCATGTGGGCGAAAAAACCTATTTTTGTGACCAATGTCCAGAAgcctttaaatattctattgatcttaaagatcataaaattttgcattataaacaaaaattaaatgctgaacaacaacaacagcagcagcaacaacaaacacaacttGATTTGGATCCCAAAAGTGAAGATCTAACAAATGAAACTATTATAATGGAAACAGATACTGCTGTAGTTACTTTGGAAACGCTATATGAGATAGAAAAAACTGATGAACaataa
Protein Sequence: MLLGRICRTCLKKSAGMHKLREYIQDVQIEDMLNQSVPNFELEMEDIPLPVEICEDCLNKLQIAFDFVKMCAQSNKELKSILNQQEQEIEGAFVSVLGEVNPMEISEETDILMDNFKKELHDDSTSNQIVGEKEEQKMEVVKLEIEVQNESHYNEDAVSSSDEYWPNDEKEDSDNNFFESMNKPSADIKPKRKYHRKVPLKRSSVNTCLHCKKVFSKKTLLTKHLSVHDPDNEFVCDICGYRFSSERKLKTHINGKHNDVELSLSDGPYPCPDCPMIFQQKRSLAAHRIVHAERDIKCQVCDMDLKTVAALTRHMNCKHPDVLPYKCNLCEKAFPVENQLNDHINEHMGYKKHKCDLCEKSFPNPSALKDHVRVHTGESPFLCAHCGNCFKTANVLRQHLQRHGEKKFHCTECPMKFYFKENLNKHMTSHTKLKPHICDICGSAFTRLYSLKAHKFKHSGERPFKCEECNMSFVFKRHLKRHKLTHTGEKPHMCTFCDRAYAASGDLVKHLRTHVGEKTYFCDQCPEAFKYSIDLKDHKILHYKQKLNAEQQQQQQQQQTQLDLDPKSEDLTNETIIMETDTAVVTLETLYEIEKTDEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01194578;
90% Identity: -
80% Identity: -