Basic Information

Insect: Cochliomyia hominivorax
Gene Symbol: -
Assembly: GCA_004302925.1
Location: PYHX01003338.1:61664-67309[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2e-05 0.001 19.3 0.2 2 23 260 282 259 282 0.95

2 16 3.4e-05 0.0018 18.6 7.0 2 23 290 312 289 312 0.96

3 16 6.3e-05 0.0032 17.7 4.3 1 23 330 353 330 353 0.96

4 16 2.6e-05 0.0013 19.0 1.2 3 23 398 418 397 418 0.99

5 16 0.0056 0.29 11.6 1.1 1 23 424 446 424 446 0.98

6 16 5.1e-07 2.7e-05 24.3 1.4 1 23 452 474 452 474 0.99

7 16 2.1e-05 0.0011 19.3 2.6 1 23 480 502 480 502 0.99

8 16 3.2e-05 0.0017 18.6 0.9 1 22 508 529 508 532 0.91

9 16 1.1e-05 0.00056 20.1 0.8 3 23 755 776 754 776 0.97

10 16 0.0017 0.089 13.2 4.7 1 23 783 806 783 806 0.97

11 16 0.00013 0.0069 16.7 3.3 1 23 824 847 824 847 0.97

12 16 5.2e-07 2.7e-05 24.3 2.5 3 23 878 898 877 898 0.99

13 16 1.4e-05 0.00072 19.8 0.4 1 23 904 926 904 926 0.99

14 16 2.2e-06 0.00011 22.3 2.9 1 23 932 954 932 954 0.98

15 16 7.5e-06 0.00039 20.6 2.2 1 23 960 982 960 982 0.99

16 16 0.00018 0.0093 16.3 0.5 1 22 988 1009 988 1012 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2e-05	0.001	19.3	0.2	2	23	260	282	259	282	0.95
2	16	3.4e-05	0.0018	18.6	7.0	2	23	290	312	289	312	0.96
3	16	6.3e-05	0.0032	17.7	4.3	1	23	330	353	330	353	0.96
4	16	2.6e-05	0.0013	19.0	1.2	3	23	398	418	397	418	0.99
5	16	0.0056	0.29	11.6	1.1	1	23	424	446	424	446	0.98
6	16	5.1e-07	2.7e-05	24.3	1.4	1	23	452	474	452	474	0.99
7	16	2.1e-05	0.0011	19.3	2.6	1	23	480	502	480	502	0.99
8	16	3.2e-05	0.0017	18.6	0.9	1	22	508	529	508	532	0.91
9	16	1.1e-05	0.00056	20.1	0.8	3	23	755	776	754	776	0.97
10	16	0.0017	0.089	13.2	4.7	1	23	783	806	783	806	0.97
11	16	0.00013	0.0069	16.7	3.3	1	23	824	847	824	847	0.97
12	16	5.2e-07	2.7e-05	24.3	2.5	3	23	878	898	877	898	0.99
13	16	1.4e-05	0.00072	19.8	0.4	1	23	904	926	904	926	0.99
14	16	2.2e-06	0.00011	22.3	2.9	1	23	932	954	932	954	0.98
15	16	7.5e-06	0.00039	20.6	2.2	1	23	960	982	960	982	0.99
16	16	0.00018	0.0093	16.3	0.5	1	22	988	1009	988	1012	0.91

Sequence Information

Coding Sequence: atggaagagtttatagaaaaaatcgaaaatcaaCAATGTCGAACATGTTACAATTCTACAAAAGGTCTAAAAAGACTTACAAATCAAACCAAATGCCTCTCCGGGAgccaacaactacaaaaatcaTATGCCGAACTTTTAAAAGAAGTTTCCAACATAAATGTAATGGAAGATTTATATGCCGAACAGATGCCTCAATTAATATGTGAAGTTTGTGCTCGGAGACTTAAAGCGGCTCATGTTTTCATACAACAGACATGGGAAGTTAATGAACGTTTAAAAGCTATAGCTGGTCAAGTGGAGGCCAATAAGGATTTGAAATGTTTGCAAGAAGCTCCGGTGGATATTTTGCCTATAGCTGATATAAAAGCAGAAAAACATGAAGATGAAGAAATGGATTTTTTGGGTCAATTTGAGCCAGAATGTTTTGTAgagttaaaagaagaaaaatcggACAGTATTATTTTAAAGGATGATTTTAAAGTGGATATGCTGGATTTGAAAAAGGCTGATCAAAATGCCATTGAAATcttAACATTACCAGAATGTCAATCATCGGATATTACAGATCCTAGAAAAACCAATCCATTGGATAATAAAATTCCGAAATCAAATGATTTTTCTCTGGATGaggataataataatttttctgatgCTGATTCTGATTGGAAAGATGATAATGATATTGAAGAAATACAAAACACTCAACCGAAGAAAAAGAAAAGCTCTCCTAAATCTCGAAAATCTTCCAATAATGCCGATGATGATATAGCCGTTCCCTGCGCTGAATGTAACAAAATCTTTACCAATGCCAAGGCCTTGGTACGTCATCAACGTAATACCCACGTACCCGAAGAACAAAAATGTACTTGTCCTTTATGTGGTCGTAGATTTTCACGTTCCTGTAATATGTATAAACATATGCGTACATTTCATGGTCCTGATTCGGTACCTTTAATACGAAAACCCTCTAATAAAGAGCGTTCATTTCAATGtgataaatgtgaaaaaaattacacaaagaAGAGTCATcttaatttacatataaaagagAAACACAATCCTGAAAATAGTAATCTAGAAACTGATAAATCAGAACAACAGCCTACAGATGCTACAGAAACAAAACCCCAGGACGGTAATGAACCAAAAAAGGATAAACCCAAAAAACGTTATGAAGTACGTTCGTTATGTTCTATTTGTGGGAGTTCATTTGCCAGTAGAACCCATTTAGTGGTGCATATGAGACGTCATACGGGAGAGAGGCCTTTCAAATGTGATTTATGTGAAAGAGCCTATCCTCGACTCTCAGAACTTGTATGCCATAGACGCATTCACACCGGTGAAAAaccatttaaatgtaaaatatgtgATAAAGCTTTTCGCGTTTGGAGTAAAATGAGCAATCATATGCGTTCACATACCGATATAAGACCCTATAAATGTTCGCAGTGTGaaagaagttttaaatattccaaagatttaaatatacattttcgtATACACACGGGAGAGAGACCGTACAAATGTAATGTGTGTGGTAGCACGTTTACACAAAGTAATACTCTAAAAGCTCATCGTTCTAAGTTGGGTCATATGGATGATATGAATACTAAAAAGATGAATTTCTGGGAGAAATTAGAAGTTCGTCAATGTCGTACATGTTATAATGAAACCAAAGGATTAAAACTCCTTACAGATCTAACAAATTGTCCAGGCAATGGTCAAATGTCCTTTGCAGAACTTTTAGCAAATGTTTCTCACATTAatATAATGCAAAATAATCATAAAGAGTTACCACAATTTATATGCGAAACctgttcaaaaaaattaaaggctGCCCAGGCTTTCATACAACAAACTCATAAAGTTAATGAGCAGCTTATGGAATTGCTGGAACGACAAAGAAAATCAAAACAGAAATTAGATTGTCTAGCGGAGATTCCGGTACAAGTAGAAATTGCCTTTGATAATAGCCAGGAAGACGTGGGTTTTAAATTAGAACCTGAAGAATGTGCAGAAGATTTATTCAATGAAATGAAGAAAGATGAACCCTGTGATACAAAGGAAGAgaaGATGGGAAAAGATGTATTAGAACCAATATCCTCATCtggttatataaaaaatgaagagGATCAAgtcatctatagtccagataatcaATCGCATGATAGGGAGAAAAATGCGAATAAACttcgaaaatctaaaaaatccaAAGATTCTGTTGAAATCCTGAACGAAGATGATGATGTTGCTGTAGCTTGCAGtaaatgtgataaaattttcgataactctAAAGCTCTAACACGTCACCTCAATACTAGTCATTTAACAGAAGATCAAAAATTTGCTTGTCCCATATGTTTTCGCAAATTTACTCAAACCTGTAGCATGTACACACATATGAGAACATTTCATGGTCCCGATAGTGTACCCCTTATACGAAAACCTTTAACAGAAGAAAGAACATTTCAGTGTAGTAAATGTCctaaaaattatactaaaagaaaatatttacttgtaCATATGAAAAACAAGCACAGTCAAGGGAACGAAGATACTACAAGTGATGAAGTAAAACCATCAACTAATGAGGAAACAGCAAACAAAAAATCTCCCAACAGACCCTTATGTTCTGTATGTGGTAAAtcgtttattaataaaactcaTCTAACCATACATATGAGACGTCATACGGGAGAGCGTCCTTTTAAGTGTGATCTTTGTGATAGGGCCTTCCCACGTTTAGTTGAGTTAACATATCATCGTCGCATACACACTGGCGAAAAGCCTTTTGAGTGTAAAATTTGTGGTAAATGTTTTCGTGTTTCAAGAAAACTTAATTCACATATGATTTCACATACAGATGAACGACCCTATAAATGTACAGAATGTGaaagaagttttaaatattccaaagatttaaatatacattttcgtATTCACACGGGAGAGAGACCATATAGTTGTAATGTTTGTGGTAGTACATTTGTACAAAGTAATAGTTTAAGAACCCATCGCATTAAATTGGGTCACATGGAAGAAGGtgaagataataataaaaattaa
Protein Sequence: MEEFIEKIENQQCRTCYNSTKGLKRLTNQTKCLSGSQQLQKSYAELLKEVSNINVMEDLYAEQMPQLICEVCARRLKAAHVFIQQTWEVNERLKAIAGQVEANKDLKCLQEAPVDILPIADIKAEKHEDEEMDFLGQFEPECFVELKEEKSDSIILKDDFKVDMLDLKKADQNAIEILTLPECQSSDITDPRKTNPLDNKIPKSNDFSLDEDNNNFSDADSDWKDDNDIEEIQNTQPKKKKSSPKSRKSSNNADDDIAVPCAECNKIFTNAKALVRHQRNTHVPEEQKCTCPLCGRRFSRSCNMYKHMRTFHGPDSVPLIRKPSNKERSFQCDKCEKNYTKKSHLNLHIKEKHNPENSNLETDKSEQQPTDATETKPQDGNEPKKDKPKKRYEVRSLCSICGSSFASRTHLVVHMRRHTGERPFKCDLCERAYPRLSELVCHRRIHTGEKPFKCKICDKAFRVWSKMSNHMRSHTDIRPYKCSQCERSFKYSKDLNIHFRIHTGERPYKCNVCGSTFTQSNTLKAHRSKLGHMDDMNTKKMNFWEKLEVRQCRTCYNETKGLKLLTDLTNCPGNGQMSFAELLANVSHINIMQNNHKELPQFICETCSKKLKAAQAFIQQTHKVNEQLMELLERQRKSKQKLDCLAEIPVQVEIAFDNSQEDVGFKLEPEECAEDLFNEMKKDEPCDTKEEKMGKDVLEPISSSGYIKNEEDQVIYSPDNQSHDREKNANKLRKSKKSKDSVEILNEDDDVAVACSKCDKIFDNSKALTRHLNTSHLTEDQKFACPICFRKFTQTCSMYTHMRTFHGPDSVPLIRKPLTEERTFQCSKCPKNYTKRKYLLVHMKNKHSQGNEDTTSDEVKPSTNEETANKKSPNRPLCSVCGKSFINKTHLTIHMRRHTGERPFKCDLCDRAFPRLVELTYHRRIHTGEKPFECKICGKCFRVSRKLNSHMISHTDERPYKCTECERSFKYSKDLNIHFRIHTGERPYSCNVCGSTFVQSNSLRTHRIKLGHMEEGEDNNKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -