Chom014037.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- CSRNP3
- Assembly
- GCA_004302925.1
- Location
- PYHX01003113.1:49409-52800[+]
Transcription Factor Domain
- TF Family
- CSRNP_N
- Domain
- CSRNP_N domain
- PFAM
- PF16019
- TF Group
- Unclassified Structure
- Description
- This presumed domain is found at the N-terminus of cysteine/serine-rich nuclear proteins. These proteins act as transcriptional activators [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.036 6.1e+02 0.1 3.7 58 115 95 153 71 168 0.46 2 2 3.4e-95 5.7e-91 304.2 7.1 2 218 373 575 372 575 0.92
Sequence Information
- Coding Sequence
- ATGTTAAAAAAGCCCATAAAAACATTAGCTACAAATGGTTCTGAAATTTTAGAAGTAAAAAAGACATCTAATATTAATTGTAGTATTGTTATTAGTCATGATTACAATCGAAATCACGCTCTAACACCTGTTGATGATGAATTAGAAGATTTTCGTCATGATCCTATGGAAGTGTTGGGTACAACTTCGTCACCTTGTTCGAATCAACAGGTCGATGAGTTTTGTTCGGTGGGAAGCGCAGAAGAAGTATTGGAAAGAGATGCAACGACGGCAGATGAGAATGAAGAAGAACAAATGATGCGAAATGAAACAGAGGAAGATCAAAAAGTTATGGACGAAACAGATCTAGAAGCGGAAGATGAAGAGAAAGACAGTGAAGCAGGGAATGAACTACAAGGTGTAATTTTATTAGAGGAAGGTGAGGAAGAAGAGGAGGAAGACGAACCATTCTTGGATATGGATGAATATAAAAgcTCCAATGTAATTGTTTTAGATGAAGTGGACTTAAATGCCTCTACGACATCCGTAGACACTAACAACACGGCAGACGACCCCTTAGCTATAGCTTGTGAAGAACAAGAAGCATTTGCTGCAGATAAAGCAGCTGCATTGGAAGAATTAAATTTACTCAATAATTTGCAAACATCACAAGATGAAGACACTAGGACGACCACAGATGAAGATTTACACTGGCTGAAAACCGATTTAGATGATAATCAGCCATCATGCAGTAGTAAAGTATTAATTAAAGACAATGTCTCAGAAGTGACACCCGAAAAAGAAGAACGTAATGGTGAAGGTTCTGATTCGGGATTAGGTAGTGAAACATCTGCCCTACATACAACCACAACAAGTATTACCGATACTAGCCAGTTGAACATGACTACAACAACACCATCACAGACGCCTACGCAAGTTAAAACGaaagataatgaaaaattaatcaatGCGAACGTGCTACAACTAACAAAATCACCTCCCAAAGATCCTCTGAAACCATATCGATCAAATTTAAAACGACGTTTAGAAGTAGACGATGATGTTTTGGGTAACTTAACATCCTCGGGATCTGCGTTAAGTGAGCATAGTTCTATAAATGGTAGCATACAAAAGAAACCAAAGCGTTCAATCAATTTCGATAGCGTTCAAGTTTATTACTTTCCTCGACAACAAGGCTTTAGTTGTGTTCCCTCTGCGGGAGGTTGTACTTTAGGCATGGGTGCCAGGCATGTAGCTTTTAAGACCCTAACATTAGCTGAACATGCCGCTGAGCTAAGAAGAGCGCATCGCATGCAGTTGCAGGAAATTAATCCTAGAGGTTCTTCCAGTGATGACAGTGAGGAATCAGAAGAAGATTATTTAAGTGAAGGTAGTGGTTCTGATTTGGATGGTGAATCGAATGGTTTCCTTCAGCCCGTTTCGCCTAAACAGCGAAGAGCATTACTAAAAGCTGCGGGTATACGTAAAATAGATCCCAGTGAAAAAGCTGATTGTCGCAATATTCGTAATAGTCGAGAGGTTTGCGGTTGTACATGTCGTGATTTTTGTGATCCTGAAACTTGTTCTTGCTCTCAATCTGGCATTAAATGTCAAGTTGATCGTGATATGTTTCCCTGTGGTTGTTCTCGTGATGCCTGTGGTAATATAATTGGACGTGTAGAATTTAATCCGACTCGAGTGCGCACCCATTACATACACACTTTAATGCGTTTGGAGATGGAGAATCGTCAACAACAAAATCCTTATTCTTCTGCCGTTGCCTCACCCATGCACCCATCCACACCTTCCTCGTATTATCAAAATCATTTGCAACCAcaatcaaattatagttcaggttACGCATCACCGGCTTATAATACTGCCTCTGACCTACATCAACAAACGGCTGCCAATTCATACTATCACACACAAACACCATCCACTTCGAATAGCCTCTATGGTCAACAAAATGCTATTGAAATGTCACATAATGGTAGTGCGGCTACAGCCACAACTGCGCCACAATATTCAATGGATAGTTTGGATTCATCACTTTTTGGTGGGACCACAACAGCGACGCCCTCATATGGAGAGCTAATGCCGGTGACATCTTATCATTATGGAAACGTACAAACACAAgtATCACCCTATAATTCCTATCACAATAGCAGTCCTTATATCAATACCAACAATACCATAAATTCCTTGAACACGCCTAGCACCTATAGTTCATGTGCTGTACCCTCTATACCACCCTATGGCACGGCTACTACAACCGAGGCTTCAGGAGTATATCACAGTGTAAGTAGTTTAACTAGCCTAGAGACCACAACAGCGCCCTCTTGTGGGGTTAATGGTGCATCATCTTTGGAAAATGATTCCACCACCACGTCGAGTTTCATAAGCCTATCAACTCCTTTGGCCAGTTCCTCAAGATTATCGCAAATAAATGATTTACTACAGCACAATCGTAATACAACAACAGCCCTAGTAGCTGTTTCACAAAATATAGGAGCCACAAATAGTAATTCAGCGGCAGCAGTCTGTAGCAGACAAGTTAATGGTAATCATTTACAAAATGCCAACGCATCATCTTGCTCATCCATTAATACACCACCAATTGAAGATGCTCATAAGACGTGTATGACTTATGAAGAATTAGCAGTGCCACCTTTAAAACCCGCGCCAATAGTGGCAGTTATTGAAAATGATACCAATACAGGACCAGTtgaaacaacagcaacatcactACCTGcaacaaataaagaaacaatggaaacttctttaaaaacaaaGCTACCAGAAACAACGGCCACCACAACTATATCAACACTTAATAACGAATTCTTAACACAAACTTCTCAATTAAGTAAAAGTGGCCAAAATTCCACTGGTAGCAGCAGCAGTAGTAATAATACTACAACTGTTGTGGCGGTAAGTGCAAATTTAGAACCTTCAACAATAGAAGTGGCCGCTGGCAAATAA
- Protein Sequence
- MLKKPIKTLATNGSEILEVKKTSNINCSIVISHDYNRNHALTPVDDELEDFRHDPMEVLGTTSSPCSNQQVDEFCSVGSAEEVLERDATTADENEEEQMMRNETEEDQKVMDETDLEAEDEEKDSEAGNELQGVILLEEGEEEEEEDEPFLDMDEYKSSNVIVLDEVDLNASTTSVDTNNTADDPLAIACEEQEAFAADKAAALEELNLLNNLQTSQDEDTRTTTDEDLHWLKTDLDDNQPSCSSKVLIKDNVSEVTPEKEERNGEGSDSGLGSETSALHTTTTSITDTSQLNMTTTTPSQTPTQVKTKDNEKLINANVLQLTKSPPKDPLKPYRSNLKRRLEVDDDVLGNLTSSGSALSEHSSINGSIQKKPKRSINFDSVQVYYFPRQQGFSCVPSAGGCTLGMGARHVAFKTLTLAEHAAELRRAHRMQLQEINPRGSSSDDSEESEEDYLSEGSGSDLDGESNGFLQPVSPKQRRALLKAAGIRKIDPSEKADCRNIRNSREVCGCTCRDFCDPETCSCSQSGIKCQVDRDMFPCGCSRDACGNIIGRVEFNPTRVRTHYIHTLMRLEMENRQQQNPYSSAVASPMHPSTPSSYYQNHLQPQSNYSSGYASPAYNTASDLHQQTAANSYYHTQTPSTSNSLYGQQNAIEMSHNGSAATATTAPQYSMDSLDSSLFGGTTTATPSYGELMPVTSYHYGNVQTQVSPYNSYHNSSPYINTNNTINSLNTPSTYSSCAVPSIPPYGTATTTEASGVYHSVSSLTSLETTTAPSCGVNGASSLENDSTTTSSFISLSTPLASSSRLSQINDLLQHNRNTTTALVAVSQNIGATNSNSAAAVCSRQVNGNHLQNANASSCSSINTPPIEDAHKTCMTYEELAVPPLKPAPIVAVIENDTNTGPVETTATSLPATNKETMETSLKTKLPETTATTTISTLNNEFLTQTSQLSKSGQNSTGSSSSSNNTTTVVAVSANLEPSTIEVAAGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259201; iTF_01194405; iTF_01260997;
- 90% Identity
- -
- 80% Identity
- -