Chom009058.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- Mblk-1
- Assembly
- GCA_004302925.1
- Location
- PYHX01000980.1:412066-440304[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-13 3.7e-10 39.3 0.1 1 45 383 428 383 428 0.95 2 2 8.5e-19 1.8e-15 56.3 0.0 1 43 859 902 859 904 0.95
Sequence Information
- Coding Sequence
- ATGGGGCGCAGGAAATGGAAGCAATATCAAGAAACATTAATGCGAACCCAATTAAATTCCGACCAATTTGTTGCCTCAATCGAAGACAACAATATCGAACTGAAGAAAGAGctggataaatttaaaaacggtgaatttatagaaatcagtaaaacaacaataacaacaacaccaacaattgCAACAATAGAAAAAGGAGAAACCAGAACAATTGATACCCATAACCTCGAAGATAACCACCgcaaaattacagaaaaagagaaacaacaaacagaagaagaaaagaacaaAGAGCAAGAGCGCGAAATCACTAAAGAGACGCAAATAGAAAATTCCGAAAATAAAGTagataaagaagaagaattacAAGAAAAGAAACATCACATTAAAGTAGAGAACGTTAAAGGAGAAGATAAAAAGgatacaaaagaaattataacagCATCACAAATTCCAAGCGTTTGTAATAAATCATCACTTGAAAACGCTTCTAATCCAGCCGACATCACTGTTAAAGAATTcagtttaaataaatcattgaaTAAAAGTCCTTCGATATCACCGCCACCACCTGATCCCATCGATTGGAAACCGAATGATAAGTGTCATTTTTGTGTTAACGGTAAATTACTCACAGTGAACGCTAAAGGTGAATTAGTGGCCGAATCTGGCCCAACCGGGTCTGAAACGGACCACATACAAAGATTGGATTGCGAAAGTGATTCGAACGAATCATCATCTGTTGCCGTTACCGCTACTCCGAATGGTAATTTACCATTAATGACTGGTGCCGGGCCTTTAACGGACAATAATCGTGTAACATTAAATAAGTTACTAACGCAAAAAATGGATTCGGTGGCAGCACAATTTGCCGCCATACAATCAATATTACCAAATTTCAATTGGATgaatcaacaacagcaacaatctCAACCAGATTCGGTTACACCAACTACCTCAGATACATCAGCCGCCGCAATAAGTCCCTCTCTAAAGGAATCACCAAGTCCCAGTGATGCCACCGGTGAACAACCTTTAGATTTAAGTTCCAAACCGTCTCCAAACTCATCAATTAGTGGTGATTTGAAGAGTGTTAGAATAAAATCATCACGTGCTACACCTGTTCCTTCGACACGTCGCACTTATAGTGAGGAAGATTTAAATAACGCTCTACAGGAGATACGTTCCGGTCGATTGGGTACACGCAAAGCAGCCGTACAATATAAAATACCCCGTTCAACGTTGcgtaataaaatctataaattaacaGCGGAGGCAAAACGTAATAACGAACCGGCTTCGGCGGAATTGTTACAACTAGAACAGGAACTCGAAAAAGATATGTCTGATGATGAGGAAGGTGAAGTGGAGAGTAATGCCTCTACACCCCAGCCACAAGATGAGGTGATTATAACACGTATCACTACACCCAATATGCTGAAGAAATTATGCCTCAATAATGGTGAGATTGGTGGGGAGTTAGGAGCCAATGTTGATGATCATGCTTCACCCAAACCTGCTCATGTAGAATCCTCAAAACCTCAGATCATGGAGGGTATTCAAGAGCATAACACACAAACGCAATTAAATTTAGATGCCGCTCTGCCCATTTTATTGCAAACGTTGTTGTTGTCCGATAAAAATTTACGAGATGTTTTCAGTGCTGTGCTCCTTAATTCcacaaataatttgaaagatattttattGGGTGCCACTACAGCGGCAAATGCTGCAGCGGCTATGGGTGGCAATGAGGGAAATAGTGCTCTAAATAATGGTAATCAACAGCAGGATTATCGTTCCATAATACAAATgctacagcagcaacaacagcagcaacagcagcaacaacaacaaccaacttCATATGTTAGTGGCCGCCGTCTACCAAAGTCTGATACACCCGAAACGAACTCTTCACTGGACCCGAATGAGTCTTGCGATGATCCCTCGGCAATATTGAAAATTCCGTCCTATACTCCAGTGGCAGGACCTTCCAATTCCCTGGGTCCCAGCAGTTCGCGTGGTTCACCTGCTTTAATGTGtcacagcagcaacagcaattCGAATCGTAATGGTGATAGTCCGGGACCCATGCTGCTGGCAGCCGCTGTCAATGCCGCCCAAAAATTAAACAGTAAAAATCTCTCAGTTACTCCTCCTCTTTTACATGCTGGTGTTGATAATACCACCCCTCAACCCTTGAGAATGAGTGATGTTATTGCCAATAGTATACATCGCACCATGAATGAGCAGGCTAACAAGGAGGGCGTTCATAGTGGAGCAGTTTCTTTACTGGGTTATCCAGGCAATGCCGATCGCAATAATGTGGGTACTTTAACATCAGCAGGAGATTATAAGAAACCCACCATTTCAGTAGTGAAGAATATAGGCGGCACTGATACCTCCAGATTTGGAGCGGCACCTAATCTTTTGGCTTCGGATATTGTACagcatcaccatcatcattcAGCCCACTTACAACATGCCCACCATCACCTCAGTCGTCAGGAGGCAGCCGCTTTGGCTGCAGGTAAAGGTACAAGACCCAAACGTGGCAAGTATCGTAATTACGATCGAGATAGTCTGGTCGAAGCGGTTAAGGCAGTGCAACGTGGTGAGATGTCTGTGCATCGAGCCGGTAGTTATTATGGAGTACCACATTCTACGCTGGAGTACAAGGTGAAAGAGCGCCATCTGATGAGACCACGTAAACGAGAACCCAAACCCCAACCAGGGCTAGATGGTACAAGCAATAGTTCAAAGACAAATGCCAACATTCCTGCAGGCCTAACGGGTCTAGATAAACTTAAGGCCGGTAATGGTGCTGGCACCAATGCCAATCTGAAACTAACTGCTTCGGGTATAAAAAACAATGGGGGCACTGGTGTTAACGCTTTTCCCGGTAATGCCGCCAATGGCATGAAACTGCCAATGTTCGATCCCGCCTTAGCCCACTTACCATATGCCTCACCACTCTTTTGGCAACACAACCAGGCGGCAGCCTTCAGTCAGCTGCATTTGGATTTCAATCGCAACAGCACAGCACCTTCAGCCACCTCACCCAATGAAGCCAGCAGTGAGATACTCAAAAGCCACATGCAAAGATATCAAGATGGTGGCGGAGCCAGCAGTGTTGGTGGCACTACCACTACCAACTCGTCTAATGGACCCAGTCCGGTATCAAGTCCTATTTTAACAGGACAAGATATCAATAGAGCGCGAGAGTTGTATGAAAGTAGTGCGGCCAATGGAGCCTCATTTCTGGATGGCATTATACGTAAAACCCTCGATCGCAAAAGTAATGAAGTGCAAACAGCCACCACCAGTAGCACGGCTGCGGGAGGGGTACTACTGGATCAGTTACTAATGAAGAAAACACCTTTACCATTTACCAATAATCGTAGTAATGATTACAACTCTTTGTCGCCTTCACATATGGGAGCACTTAAGCGTTCAGCAAGTCCTTTATCGATAGGTGGTACCTCCATAAAACGTGAACGTAATTCACCTCATAGCGGCTTGGGAAGCGGAGAAGAGGAAGATGAAACTTCACAAAGTGGTATTGATGAGAGTTAtgaacacaacaacaataaaagcgGTAATGGTGGCTTAAAGTCGTCTAACTTAAGTCAACGTAGTCGTATGGGTTCTAGAGATTCCAATTCCGAAACTGATAATAGCAGTTTAAAAAGTGAATTACATATGAGTAATCATCATAACCAAAACCAGGGTttaagtaataataacaataacaacaataatggcAACAATGTGGTTAATATTATGGATATAAATGGTGGTttaggtggtggtggtggtggtggtagtgGTAGTGTTAATGTTAAAACTGAAATTCCTAACCTCGAAACAGGCACCTCgattttacaagaaaaactcTCACAAATCAAAGCCGAACAACAAGATTGTGAAGAAAACTTATAG
- Protein Sequence
- MGRRKWKQYQETLMRTQLNSDQFVASIEDNNIELKKELDKFKNGEFIEISKTTITTTPTIATIEKGETRTIDTHNLEDNHRKITEKEKQQTEEEKNKEQEREITKETQIENSENKVDKEEELQEKKHHIKVENVKGEDKKDTKEIITASQIPSVCNKSSLENASNPADITVKEFSLNKSLNKSPSISPPPPDPIDWKPNDKCHFCVNGKLLTVNAKGELVAESGPTGSETDHIQRLDCESDSNESSSVAVTATPNGNLPLMTGAGPLTDNNRVTLNKLLTQKMDSVAAQFAAIQSILPNFNWMNQQQQQSQPDSVTPTTSDTSAAAISPSLKESPSPSDATGEQPLDLSSKPSPNSSISGDLKSVRIKSSRATPVPSTRRTYSEEDLNNALQEIRSGRLGTRKAAVQYKIPRSTLRNKIYKLTAEAKRNNEPASAELLQLEQELEKDMSDDEEGEVESNASTPQPQDEVIITRITTPNMLKKLCLNNGEIGGELGANVDDHASPKPAHVESSKPQIMEGIQEHNTQTQLNLDAALPILLQTLLLSDKNLRDVFSAVLLNSTNNLKDILLGATTAANAAAAMGGNEGNSALNNGNQQQDYRSIIQMLQQQQQQQQQQQQQPTSYVSGRRLPKSDTPETNSSLDPNESCDDPSAILKIPSYTPVAGPSNSLGPSSSRGSPALMCHSSNSNSNRNGDSPGPMLLAAAVNAAQKLNSKNLSVTPPLLHAGVDNTTPQPLRMSDVIANSIHRTMNEQANKEGVHSGAVSLLGYPGNADRNNVGTLTSAGDYKKPTISVVKNIGGTDTSRFGAAPNLLASDIVQHHHHHSAHLQHAHHHLSRQEAAALAAGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPGLDGTSNSSKTNANIPAGLTGLDKLKAGNGAGTNANLKLTASGIKNNGGTGVNAFPGNAANGMKLPMFDPALAHLPYASPLFWQHNQAAAFSQLHLDFNRNSTAPSATSPNEASSEILKSHMQRYQDGGGASSVGGTTTTNSSNGPSPVSSPILTGQDINRARELYESSAANGASFLDGIIRKTLDRKSNEVQTATTSSTAAGGVLLDQLLMKKTPLPFTNNRSNDYNSLSPSHMGALKRSASPLSIGGTSIKRERNSPHSGLGSGEEEDETSQSGIDESYEHNNNKSGNGGLKSSNLSQRSRMGSRDSNSETDNSSLKSELHMSNHHNQNQGLSNNNNNNNNGNNVVNIMDINGGLGGGGGGGSGSVNVKTEIPNLETGTSILQEKLSQIKAEQQDCEENL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -