Chom008820.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- bab2
- Assembly
- GCA_004302925.1
- Location
- PYHX01003277.1:108995-110911[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.7e-08 7.8e-05 22.2 0.0 8 39 418 449 416 452 0.89 2 4 1.9e-14 4.1e-11 42.3 0.0 5 44 469 508 466 509 0.93 3 4 0.0095 20 4.9 0.0 27 38 538 549 534 555 0.88 4 4 5.1e-15 1.1e-11 44.2 0.0 4 41 577 614 577 616 0.92
Sequence Information
- Coding Sequence
- atgaacaatttaaaatgGATGGGCCATTCGGCCACAATATTAGATATACACAAAAACCTACGAGCCGATTTGAAAAGTTGTGATGTTACTTTGGTGGCCAAGGGACACAGTGTAAAAGCCCACCGTTTTGTTTTATCATCATGCAGTGATTTAATGCGATGCCTGCTGACGGATGTACCCATTGGTCAAGAATGTTGTGTAATGGTACCCGATATAAAGGGCCATTTATTGGATAATGTTTTGGCATTTATTTACTTGGGTGAATGTTCTCTATCATCTACAAATTTATCTGAGTTTTTGGAAGCTATTAATGTTATGGGCATTAAAAGTGCCATAAGTTTTGAATGCAATACAAATGCTTTACAATCGGCACAAAACGCAAGTAATCAACACAATAGTATGGGACTAGATAATAGCTCCTCTATGGCTCCAGCAAGTAATACAATTACAACAAGACAAGTAACCCTGGGAAATGCTGTAGAAACAATGCATCAAGAGGAAATAATTGAAAGCCAAAATGTGATGCATACGGAGGCAGGCACTGGTGTTGCTACAGGTGTTAACAATTCTGCCACAACTAGAGAATTGGACTTTTTGGATGTTTATCATGAACCCCAACATAAGATAACCTATTCAATTGAACATGTTCCCGGCTCAACAACTGGCAATGAGTTCATTTTAACAGAAAACTCGGGTACTTTCACTTTGACGCATAGCGGTAAATTGGAAGCAACCACATCGCCGACAGATTCTTCTACTATGGAAGTGACTGAAGATGAGGCATGTGAGGCTCATATTATAGAGGAATATAGTAGTGGTGATGAACCTTTAATACAAATAGGGGAAGCAGCTCAAAACCAGCAACAGCATAGTGTAACAGTAGCCCAAACGGCgcctcaacaacaacaacaacaccatcaacatcatcatacTCATGCTCAACAAACAACAACTTCTATTGCCACCGCCACCGCAGCAACAAATACCACTTCCATTATTCaagtaaaaccaaaaattaaaactattaaattaaaacatcaaCCTGCTCCTCAACAGATTATAACCAAAATGGAAGAAGAATTGCCCGAGGACACAGGTGGCAACGATGATCCCATTTCAATATTACAAACATCTAATGAGAGTTTTACCCTGCTAAAAGACGGTACTATGGTGTCCACTGGCAATACTAGTCATGATGAGTCCACAGATTTTGCTATGAATAGTTCCGTTGGCTCCTCGGCAGCTGATTTAGCTTATGAAGCTATGGTCAATGAGGGTATGTCTCTACCAAAAGCGGCcgataaatttaatgtttccaAAGCAGAATTATGGCGTCGTGTACGTAGTACTGGAGTGGATCAactaaataaatctataaaacttGATCCCGATAAAATCGATGTTATAGAGTTGGCCAGCAAAGCGGTTATAAATGAGGGATTGTCGTTACAAAAAGCAGCGATACGATATGACATTTCTAAGACCGTACTATGGCGGCGGGTACGCAAACATCCTCAATACATGAAAACCGCTAGAGAAAATCCAATCATTGCAAAAGCCTACGAACGTTTAAAATCTGGTGAATCACTTAAAAGCATATCACAAGATTTAGATATACCTATGTCCACATTACATCGCCACAAAGTGCGTCTCTCACAAACGGGCCAATTACCCGATTTTGTTACTTGCAAAAAACGTGATAGCATGTCCAAAGATGATCTTAAGATAAAACTTTCGAAAGCAGTACATGCTTGTGTGCACGAAGGTATGTCGCAAAATCATGCAgctaatttatttcaaattagcAAAAGTACCTTGTGGCGCCATTTACAAAAACGTGTAGCTGAAGCTGAGGCAGCCGAGACTGAATCTATGGGAGATGAAgatgaaattaaacaagaagtCATTCTTTCATAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRADLKSCDVTLVAKGHSVKAHRFVLSSCSDLMRCLLTDVPIGQECCVMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVMGIKSAISFECNTNALQSAQNASNQHNSMGLDNSSSMAPASNTITTRQVTLGNAVETMHQEEIIESQNVMHTEAGTGVATGVNNSATTRELDFLDVYHEPQHKITYSIEHVPGSTTGNEFILTENSGTFTLTHSGKLEATTSPTDSSTMEVTEDEACEAHIIEEYSSGDEPLIQIGEAAQNQQQHSVTVAQTAPQQQQQHHQHHHTHAQQTTTSIATATAATNTTSIIQVKPKIKTIKLKHQPAPQQIITKMEEELPEDTGGNDDPISILQTSNESFTLLKDGTMVSTGNTSHDESTDFAMNSSVGSSAADLAYEAMVNEGMSLPKAADKFNVSKAELWRRVRSTGVDQLNKSIKLDPDKIDVIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIIAKAYERLKSGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKIKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_00350291;
- 80% Identity
- iTF_00350291;