Chom002812.1
Basic Information
- Insect
- Cochliomyia hominivorax
- Gene Symbol
- retn
- Assembly
- GCA_004302925.1
- Location
- PYHX01001642.1:4836675-4854122[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-26 5.4e-23 81.1 0.0 2 89 20 105 19 105 0.96
Sequence Information
- Coding Sequence
- atgttgATTTCTGAGGATCAAATTCAAGAGttaTACGAGATCAATGATGATCCAAAGCGTAAAGAGTTCCTTGATGATCTATTTTCATTTATGCAAAAAAGaggCACGCCCATAAATCGTTTACCTATAATGGCCAAATCAGTATTAGATCTTTATGAACTATATAATTTAGTGATTGCTCGAGGAGGTCTTGTCGatgttattaacaaaaaattgtggCAAGAAATCATCAAGGGTCTTCATCTGCCATCGAGTATCACAAGTGCTGCATTCACACTACGAACACAATACATGAAATATCTTTATCCATACGAATGTGAGAAAAAAAATCTGAGTACCCCTGCAGAATTACAAGCTGCCATTGATGGTAATCGCCGGGAAGGTCGCCGATCCAGTTATGGTCAATACGAGGCAATGCATAATCAAATGCAAATGCCCTCAATGGCTCGCCAATCTTTACCAGGAGGTATGCAACAAATGTCACCATTAGCATTGGTTACACATGCGACAAACAATCAACAAGCGCAGGCTGCTGCAGCTGCTGCGGCTGCTCACCACAGACTGATGGCACCATCATTCGGTCAAGTACCGAATTTGGTAACACAAGAAATAGAACAACGTATGATCGAATATTTGAAACTTATTCAagtaaaaaaggaacaaaatgcTATGAGTAACGGTTCTGGTCCCATGGGTTTATCGCCTCATCATCAACATCACtctcagcagcaacaacaacagcgcCAGAGATCCCAGAGTCCAGATATAAGTACCAGGGAAGCATTGAATGCATTGGAAATGTCACGTGTCGCATTGTGGCAAATGTACCATAATAATACCAGTCCCCCAGCCTCAGTGAATACTTCACCACAAGGTGGCGGTGGTGGCGGAAATGTGAACAATGCTGGCAATCAAGATGTTATCGAAACACACCGCGAAGCTTTAAACCTTTCGGACTCACCTCCTAATCTCACCTCTATCAAACGTGAGCGAGAACGCGAACCAAGCCCCGAAATGAATGAACACAGCGACTTTCTCCATCAACCTCCGCCAGCTAAACGTGCCGGATTTCCTTCAAGCTTTTACTTACCTTCAGGTATGAGTAGCATAGCTGCTGCTACTGCGGCAAATTTCCACTATAAAAGTAGTCATAACGACTCGGATGCTGAGCACGAAGAAGAGAATGATGAATGCGAAGGAGAACATAATACAACAGCAAACTCTTCTAATGATGACCCCAATGAGAGTCAACATTTAAGTGGAAGTTCTCTACGACCACCACGACATCACGGAAGTAGCGGAAGTGTTCACAATGATAATAAGTCTGACGATTCTGCCATTGAAAATTCTCCATCAACCTCTGCTGCATCGGCTGGAAATGGTCACACTTCCCCCGTATctactaaaaaaaatcatttgtcaAAGCAGACACAACTGCACAACGTATCAACAACGAATACTGCCAGTAGTGAGGTATGTGACGACAATATTTCGGGCAAATCTTCCTCGCTTGGTCCATTCGAGGCATTAAATTTGCTTTCTGGAATGCAATTTCATGTAATTCGAAATGGCATCAATTCAAAAGGCGAACAAGAGCTTGCGGTAAACCTTGAATTAAATGGCATTAAATACTCCGGTATACTTATTGCAAACACAGCAAATCTTGTAACAGAAAcgacatcatcaacaacaacgaCATCGATGTCATTAATTAGTGAGAACAagttcaataacaaaaatatcaacaGTTGTAACAAAAGTGATAGTAACAGCAATATAAACTGTACTCGAACGACTGGCAGGCGCAGCCACAGTCCCACCAAcatcaataacaataacaataacaataacaataacaataacaatgaaatgAGTAAGAATTTAGATGTTGCCATGGATACAATGGAAGATACCAGTGTATTGACAATGCGTGATACTGAAACACCACCAAATACATCTTCAACAACCACAACcactacagcaacaacaaatgctGTCATAGTGAATGTTCCCAATAGTAACACTAACACACTCAAGGATGCCCTTATAACATCATAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMQMPSMARQSLPGGMQQMSPLALVTHATNNQQAQAAAAAAAAHHRLMAPSFGQVPNLVTQEIEQRMIEYLKLIQVKKEQNAMSNGSGPMGLSPHHQHHSQQQQQQRQRSQSPDISTREALNALEMSRVALWQMYHNNTSPPASVNTSPQGGGGGGNVNNAGNQDVIETHREALNLSDSPPNLTSIKREREREPSPEMNEHSDFLHQPPPAKRAGFPSSFYLPSGMSSIAAATAANFHYKSSHNDSDAEHEEENDECEGEHNTTANSSNDDPNESQHLSGSSLRPPRHHGSSGSVHNDNKSDDSAIENSPSTSAASAGNGHTSPVSTKKNHLSKQTQLHNVSTTNTASSEVCDDNISGKSSSLGPFEALNLLSGMQFHVIRNGINSKGEQELAVNLELNGIKYSGILIANTANLVTETTSSTTTTSMSLISENKFNNKNINSCNKSDSNSNINCTRTTGRRSHSPTNINNNNNNNNNNNNNEMSKNLDVAMDTMEDTSVLTMRDTETPPNTSSTTTTTTATTNAVIVNVPNSNTNTLKDALITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01260775;
- 90% Identity
- -
- 80% Identity
- -