Csep019719.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015582.1:16282495-16287419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.02 3.4 9.5 0.0 2 23 269 291 268 291 0.91 2 16 0.005 0.84 11.4 3.0 1 23 341 364 341 364 0.93 3 16 0.69 1.2e+02 4.7 0.0 2 21 371 390 370 391 0.92 4 16 0.00049 0.084 14.6 4.6 1 23 489 512 489 512 0.96 5 16 0.0015 0.26 13.0 1.4 2 23 519 541 518 541 0.93 6 16 0.00043 0.072 14.8 2.4 1 21 624 644 624 645 0.95 7 16 0.0048 0.82 11.5 1.4 2 23 657 679 656 679 0.91 8 16 1.6 2.6e+02 3.6 1.7 1 23 682 705 682 705 0.94 9 16 0.018 3 9.7 0.3 3 23 712 732 710 732 0.95 10 16 0.1 17 7.3 0.2 1 23 736 759 736 759 0.96 11 16 1.2 2e+02 3.9 0.4 2 23 766 788 765 788 0.92 12 16 0.1 17 7.3 0.9 2 23 797 819 796 819 0.94 13 16 5.7 9.6e+02 1.8 0.5 2 19 825 842 824 847 0.92 14 16 5 8.5e+02 2.0 2.6 3 23 970 991 969 991 0.95 15 16 0.19 32 6.4 0.5 2 23 998 1020 997 1020 0.94 16 16 0.054 9.1 8.2 1.0 1 23 1033 1055 1033 1055 0.97
Sequence Information
- Coding Sequence
- ATGAGAGAAATGGAGACGAAATTATGCAGAATATGTGGGCGATTGGGTACAACCCATCAAGATATCTTCAGGATAGAAGGACTGAAACACAAAATAGAAACTTGCCTTCCAATATTTGTTACACAGCATTGCCTCCTGCCGGACAATATATGCGAAGAATGCTTGGAAAACATAACGAAATTCTATTACTTCATCAAAAATTGTCTCCAGAGTATAATCGTACTGGAATCTCAGTACGATGTTGCAGAATCATGTTTAAAGTCAAAAAGAAGGCACGACAAAAGTTGCCTAGTTAATTTCAACGAACCTAGAAAAGCTCAAGAAACCCAAACTGAAGATACATATGATATATTATTTACAAAATATTCTGAACAAAATTCAGACAAAATCGAGTTACCATTTAAAGGTTGTGATATAAAGTTAGTCGATTACGAGGTTGATTCTGAAATGTCAGAGTCCGATAATAAGTTGCACAATAAAGGAGTTGTGGTTGTAAATAAGAAAACTCATAAGAAGGTTGATGATTTACTGAATACTCTCTTGAGTAAAACTGCTTTTACCAAACAGTATTTTGATGATTGCGAGAATAGCTTGATAAACGATATAGCCCACAGGAAGGGAGTCAAGAGAAAACCGGATGTGATTGAGAATGTTCAACCGAAAATTTGCAGAATCGACACTATTAACCGTAGGAAGAATAGGGCGCCCAAAAAACTGCAAAATAACCCTCAAGTAAACGGATTTACAGAAACTGTACTAGCCAGTGATCAGAATCTTATAACATCGGACTTAATCTTACCTCAAAGTTGTCTCTTGTGCGATGAAAAGTTCAGTGGCCCTGCGGCTTTGGCAGCGCATATTTTCGAGATACACGATCTGGATTTGAATAAAACTGTGGAGAATTTATCGGATAGGAAAAAAAAGATTCCGAATTTATTGAAAATCTCCGATATAAAAAGGAATAGTAGTTCCGATGACAATCAGCATGATTCTAACTCCCCTAAGACGAATCAGGAAGAGTTTTCCTGTCAAATTTGTCCTTATTCGTCTTCCACCAAGCAAAATTTACGCCTGCACTGTCGTTCTGAACACCCTGTGGAAGTCCCTCTGATGTGCGGAATATGCTTTCAACCGATGACATCCTTGGTGAATTTGAGAAACCACCTTAAGATCTGCGCAATCGAGTACCCAGTGAAAACTAGGTATTATTGCTCTATCTGCAAATACGGGGAGGATGGCATGAGGGAAATGGAGAATCACGTGTTGATCCACGAGTTCTTGATCGATATCTGCAAGAGGGAGGTTAAAATGTTCGATCCGGCTGATTATGTTGAGCTGAACAATTCCTGCGAGCTAGGTCCTGTTTCACCGTCATCCAAAGACTTGAGTTGCAGCCTCTGCTTCCAGTCCAATTTCCAATCGTTCAAGGATTTTAGCAGGCATCGTAGGACCCAGCACAGTAAATTCCATTGTGACCTCTGCAACAAGTTCTATGGGAGGAATTCCCACCTCTGGAAGCACGTCAATAGGCTCCACAAGAACCACCCGAGCATAACCTGCCAGATTTGTCAGAAGACCAGCGCCTCCAAGTACCACCTAGAGCAGCATTTCGCTAAAATTCACTCTGCCAAACAGAAGACTGATCGTCGAAATATCAACGTGGTAGAAGACCAATCTGTTTTCGTGAAGTACGGTTTCTTGGATCGGGAAAAGAAGAGCACCTCTTCGGAATTCGAGGAGGCCTCGGATCAAGAGACCTCCGACGAGGTTTTTGCGACCGACGTTTCTGTCCCCAAGGAGGTAGACGCCTCCAGTCACCTTTACACCAACATCATAACGAACTACACCCCACCCCCTAACGAAGGGGACTTCAAGTGCCCCAAGTGTTCCAAGGGTTTCTCAAAGAAGCTGCTGCTGAAGAAACACAAGAAAAACTGCAGGCCAAAATCGCAGAAAGACCTGTTGACCCGCTGTAAATCCTGCTCGAGGATATTCAAGGACCGGCAGAGTTTAGCCAAGCATTTGGTGAACTACCACTCGGAATACACCTGTGAAATTTGCTCCCAAAAGGCGCAAAGCAAATGCGAGATAGTGTCCCATATAAGATTCACCCATCCGAAGTGCAAGCTCTTCTGTAAAGTGTGCGGTAACATCCTTCGCTCCCAACAGAACCTGTCGGACCACCTAAACGACCATTCCAACTCCTACATCTGTCAGTTCTGCGGTGACTCTCTACCGTCTAAGATCAAATTGAAGATGCATATCTTGAGCCTGCACCGAAAAATCCTGAGTTTGAGCTGCGGGATCTGCCTGAAGCTGTTTGAAAACCAGCACATCCTGAAGGACCACGTCCAGCTGGTGCACAAGAACGACCTGAGACCCCTGACTTCTTGCACGGTTTGCGGTAAGAACTACGGCTCCAAGTGGAAGACCTACGACCACCTGAACAAGTCCCACGGTCGCATATTCAAAGTCTGCAAGGCCTGTTTGGAGATCTTCAACACGGAGGAGGAGTTGAACTTGCACTGCGAAGAGCTGCACAGTTCCAAGAATCAGAACGTAACCATCGTCAAAAATAATTATCCGAAGGAAGATGTTGAGGAAATTGAAGAATCGGAGAGTTGCAAGGAGGAAATCGAAGATGTGGAGGATGTTGGAACCGAGGAACTATTCAGTCCCTTCGCTCAGGATTTATCGGCTATGAAGATATCGTTGCTGGAGAAAAGACTGTTGGGTAAGAAGATAAACGAGGAAAACCAAACGAAGATCGAAGATAAAACAAAACTTAACCCGACTAAAACCAAACAACCACTTAAAAAAGACTCCCCGAGATACGAAGATGATATTGCAGCCCAACAAGGCAGTTCCAAGAGAACGGTTTACGTAGACAGCGATGTGCCATCACTTTGCGAGATATGTTTTAAAACGTGGCCAGCTAAGAAGCACCTGTGGCAACACTACATTCGTTGCCATAAAAGTGTTGCAGCAACAGTTTGTGGAATCTGTCTGAAGACCAACGTTGATTACAGGACCCTCCAAAGACACTTGAGACAAAACCACCCCACTCTCTTACACGGTCAAGGCTTCGGTTCGAATTTTATATGTAAAATATGCGGGAGGTACCACAACGCAAGCTCCAAGTTGAAGTTGCACATGGCCATACACGAAAACTTCGATTGGTCCATATTGGAGAATGAGGGAGAGATAAACGGAGAGAAACTCAAGACCGAACACAACGAAACATACTACGAAAGTTTAATAGAACAAGTTGAATGTTCTTCAAACGAAGACGAAGAAAGTGAAGATGAACGAAAAGTGGATAAGGTCGATTTGAGCAGTTCCGAAGATGACAGTGAGAGTGAAACGATATCCGAAGACTCCAATCAGAATCGACACAAGTTCCGTTGTAATTCTTCAGAGAATTCTGGGATGGAAAAATACCAATTGAAATCGGACAATCTAAACGTAGACAAAAAGTTTTCTGGGACTCCTGTTGAATTCCAGACTACGGAAAGTGAGGATTCGAGTTCGGAGAGTTGCAGCAGCGAAGAAGAAGGGACGATTGGAAGATCCAATACGGCTTCTTCGAACGATGTGATGATTGTGAACGGTTTGACCAATTCGAATAGTAACGTCATCTTGGTCGATTCCATGGGGGACTCTATGACGTTTACGGATAACAATTTGTTCGGTTTCAAGACCGAGGAGTTGGATTCGGCTGTTAAGAGTATAAGTCGGGAGTGCGAGTCGCAGGTGAAGGAGGACTTGGAGGTGGAGTATTGCGAGTTGTCGATCGGTGCAGCTTTGAACGATGGAGAAATTGAGTCGGCCGTTGGGAGCATATTGTGA
- Protein Sequence
- MREMETKLCRICGRLGTTHQDIFRIEGLKHKIETCLPIFVTQHCLLPDNICEECLENITKFYYFIKNCLQSIIVLESQYDVAESCLKSKRRHDKSCLVNFNEPRKAQETQTEDTYDILFTKYSEQNSDKIELPFKGCDIKLVDYEVDSEMSESDNKLHNKGVVVVNKKTHKKVDDLLNTLLSKTAFTKQYFDDCENSLINDIAHRKGVKRKPDVIENVQPKICRIDTINRRKNRAPKKLQNNPQVNGFTETVLASDQNLITSDLILPQSCLLCDEKFSGPAALAAHIFEIHDLDLNKTVENLSDRKKKIPNLLKISDIKRNSSSDDNQHDSNSPKTNQEEFSCQICPYSSSTKQNLRLHCRSEHPVEVPLMCGICFQPMTSLVNLRNHLKICAIEYPVKTRYYCSICKYGEDGMREMENHVLIHEFLIDICKREVKMFDPADYVELNNSCELGPVSPSSKDLSCSLCFQSNFQSFKDFSRHRRTQHSKFHCDLCNKFYGRNSHLWKHVNRLHKNHPSITCQICQKTSASKYHLEQHFAKIHSAKQKTDRRNINVVEDQSVFVKYGFLDREKKSTSSEFEEASDQETSDEVFATDVSVPKEVDASSHLYTNIITNYTPPPNEGDFKCPKCSKGFSKKLLLKKHKKNCRPKSQKDLLTRCKSCSRIFKDRQSLAKHLVNYHSEYTCEICSQKAQSKCEIVSHIRFTHPKCKLFCKVCGNILRSQQNLSDHLNDHSNSYICQFCGDSLPSKIKLKMHILSLHRKILSLSCGICLKLFENQHILKDHVQLVHKNDLRPLTSCTVCGKNYGSKWKTYDHLNKSHGRIFKVCKACLEIFNTEEELNLHCEELHSSKNQNVTIVKNNYPKEDVEEIEESESCKEEIEDVEDVGTEELFSPFAQDLSAMKISLLEKRLLGKKINEENQTKIEDKTKLNPTKTKQPLKKDSPRYEDDIAAQQGSSKRTVYVDSDVPSLCEICFKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNVDYRTLQRHLRQNHPTLLHGQGFGSNFICKICGRYHNASSKLKLHMAIHENFDWSILENEGEINGEKLKTEHNETYYESLIEQVECSSNEDEESEDERKVDKVDLSSSEDDSESETISEDSNQNRHKFRCNSSENSGMEKYQLKSDNLNVDKKFSGTPVEFQTTESEDSSSESCSSEEEGTIGRSNTASSNDVMIVNGLTNSNSNVILVDSMGDSMTFTDNNLFGFKTEELDSAVKSISRECESQVKEDLEVEYCELSIGAALNDGEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -