Csep014491.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015574.1:747428-749132[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.041 7 8.5 4.8 1 23 85 108 85 108 0.97 2 15 0.027 4.6 9.1 0.1 1 23 114 137 114 137 0.97 3 15 0.0014 0.23 13.2 0.6 1 23 143 166 143 166 0.91 4 15 0.17 29 6.6 0.1 1 23 172 195 172 195 0.96 5 15 0.00013 0.022 16.4 3.3 2 21 202 221 201 224 0.94 6 15 2 3.5e+02 3.2 3.4 1 23 230 253 230 253 0.95 7 15 0.00087 0.15 13.8 1.9 2 23 260 282 259 282 0.95 8 15 0.0013 0.21 13.3 1.6 1 23 288 311 288 311 0.94 9 15 0.0022 0.37 12.5 2.2 1 23 317 340 317 340 0.95 10 15 0.29 49 5.9 0.4 2 23 347 369 346 369 0.96 11 15 0.0065 1.1 11.1 2.1 2 23 376 398 376 398 0.97 12 15 0.00059 0.099 14.3 3.0 1 23 404 427 404 427 0.97 13 15 0.0061 1 11.2 0.8 1 23 433 456 433 456 0.97 14 15 1.6e-05 0.0027 19.3 2.5 2 23 463 485 462 485 0.97 15 15 0.51 87 5.1 0.3 5 23 495 514 494 514 0.93
Sequence Information
- Coding Sequence
- ATGGGTGAATGTTTAATTAATAATGAAGAAATTCAGAAGTATGATGATGGGTCGCTAGAAAATAAATTAGAAATTATAAAAGTTGTTGAACAATTTATCGATGAAGACGGAGTTCATGAAAGAGAAGAATATATAATCAAGAACGAACAAAACAATTCAAAAAGCTCCTCTAGAGCAATTAATGAAAATCATTTATCACCTGCAAAGGAGGAGAAAGAAAATGTAAAATCTCTACATTCGAATGTCAAGAATCACAAGTGTCACATGTGTGATTTCCAGACCAATTATAAAAAGAACCTTACCCCACATATCAAATCTGCTCATTTGAATATTAAGAAATTCAAGTGTGACTTATGCGAGTATGCGGCGAGTGTGGAAAAGTACCTTGATGCACATATAAAATCTGTTCATTACCAAATTAAAGAGCACATATGTCAGCTCTGTGAATATATGACAAGTAGAAAAGATAGCCTTGAAAAGCATGTCGACCTAGTTCATCTCAATGTGAAGAAATTCATGTGTGACCTCTGTGATTATGCTGCTGGTCGGAAAGTGGACTTCGATTTACACGTTAAATCTGTTCATTTGAAAATTAAGGATCTCAAGTGTCCCCATTGTAACTATGTTACAAATAGAAAAGACAGTCTCCAAAAGCATATCAACTGTGTTCATTTAAAAATCAAGAAACACAGGTGTCATATGTGTGAATATGCTGCCTATGAAAAAAAGACCATTGAAAATCATGTGAAATCCTTTCATTTCAAAATTAACGAACAGAAGTGTCATCTATGCGTGTATGTTACAAGCAGAAAAGACAGCCTTCGGAAGCATGTCGACCGTGTTCATTTCAATATCAAGGAACACAAATGTCATCTCTGCGATTATGCCGCCAGTAAGAAGAGTGCCCTTAAAGTGCATGTGGAATATGTTCATTTGAAAACCGAGCAACATTACTGTCACCTTTGCGAGTATGTCGGAAGTAGAAAAAAATACCTTCAAGATCATATTAACGCTGTTCATTTTGGAACGAAGAAAAACAAGTGTCACTTATGCGAATATGCAGCGATTAAAAAAAGAGACATCGAGGCACACGTAAAGTCTGTTCATTTGAAAATTAAGGATAACAGGTGTCACTTATGTGAATTTGCCTCGAGTAAGAAAATTAACCTTAAAATGCACATAAAATCTGTTCATTTGAAAATTAAAGATCACAAGTGCCATCTATGTGATTATGCTGGGCGGGATAAAAAATACCTCGAAACACATGTGAGATCTGTTCATCTGAAAATAAAAGATTACGAGTGTCACTTGTGTGATTATGCTGCGAGTGAGAAAATGAGACTTAAAATGCACATAAAATCTGTTCATTTGAAAATTAAAGATAACAAGTGTCATCTATGTGATTATAATACAAGTAGTAAATCTTTACTCAATAGGCATATAAACACTGTTCATTTAAATATCAAGAAATACAAATATGATCTATGTGAATGTGTTGTAACTAAGAAAAAAACCCTTGAACTACATTTAAAATCTGATCATTTGAAAATCGAGTAA
- Protein Sequence
- MGECLINNEEIQKYDDGSLENKLEIIKVVEQFIDEDGVHEREEYIIKNEQNNSKSSSRAINENHLSPAKEEKENVKSLHSNVKNHKCHMCDFQTNYKKNLTPHIKSAHLNIKKFKCDLCEYAASVEKYLDAHIKSVHYQIKEHICQLCEYMTSRKDSLEKHVDLVHLNVKKFMCDLCDYAAGRKVDFDLHVKSVHLKIKDLKCPHCNYVTNRKDSLQKHINCVHLKIKKHRCHMCEYAAYEKKTIENHVKSFHFKINEQKCHLCVYVTSRKDSLRKHVDRVHFNIKEHKCHLCDYAASKKSALKVHVEYVHLKTEQHYCHLCEYVGSRKKYLQDHINAVHFGTKKNKCHLCEYAAIKKRDIEAHVKSVHLKIKDNRCHLCEFASSKKINLKMHIKSVHLKIKDHKCHLCDYAGRDKKYLETHVRSVHLKIKDYECHLCDYAASEKMRLKMHIKSVHLKIKDNKCHLCDYNTSSKSLLNRHINTVHLNIKKYKYDLCECVVTKKKTLELHLKSDHLKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -