Csep011899.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015574.1:1603938-1605521[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00023 0.04 15.6 1.7 1 23 115 138 115 138 0.97 2 13 0.0002 0.034 15.8 0.2 3 23 146 167 144 167 0.97 3 13 0.0077 1.3 10.8 6.5 1 23 173 196 173 196 0.97 4 13 0.0015 0.25 13.1 1.3 2 23 203 225 202 225 0.93 5 13 0.001 0.17 13.6 3.0 1 23 231 254 231 254 0.97 6 13 0.045 7.5 8.4 0.6 2 23 261 283 260 283 0.97 7 13 0.03 5.1 9.0 0.9 1 23 289 312 289 312 0.97 8 13 0.0013 0.22 13.3 2.7 2 23 319 341 318 341 0.97 9 13 0.00059 0.099 14.3 1.8 2 23 348 370 347 370 0.97 10 13 0.00017 0.029 16.0 1.7 2 23 377 399 377 399 0.97 11 13 0.052 8.7 8.2 0.3 1 23 405 428 405 428 0.95 12 13 0.0019 0.32 12.7 1.8 1 23 434 457 434 457 0.97 13 13 0.00083 0.14 13.9 2.2 1 21 463 483 463 488 0.93
Sequence Information
- Coding Sequence
- ATGGGAGATTGTAGTTTTGAAATTCAAGGAGAGATACATATTGGCGTTGATGATGTTAAGTTAGAAGAAAAATTAGGAGTCATTGACGTTTCTGAACAATTCATAGATGAAGAAGGAGTTCATGAAAGGGAAGAATATGTAAACAAGATAGAAAGTTCCCTGAACTGCCTGGTTGAAGAAACGCCTCAAGATTCTTTGATGAATAATTTTGAATCTGTTCATTTGGATAAAAGTTACGTGGGTGATTGTCCTGCAAGTGAAACTCACACACAATGTCATAACACTGGCAGTCTGAAAGATCAAAAAGTACATGTAAAATCTGAACATTCAAGTATCAAGGATCACAAGTGTGATCTGTGTGATTTCGTGACAAGGTATAAAAAAAACCTTGCTCTACATATCAAATCCGTCCATTCGAATATCAAGGACTACGGATGTGACTTATGCGAGTTTGTTACGAGTAGAAAAGGAGATCTAAATATGCATATGAAAACTGTTCATTTGAAAATTGAGGAACACCAGTGTCACTTATGTGAATACTCATCGAGACATAAAAAAGAACTTGAAATACATGTGAAATCTTTCCATTTGAATGCGAAGAAACTTGAGTGTCACCTATGTGATTATAATACAAATAGGAAAATCAGCCTTAAGAAACACGTCGATTCTGTTCATTTGAAAATCAAGATGCACAAGTGCCACCTATGCGATCATGCTGCTAGTGATAAAGGAAAACTTAATATACACATAAAATCTGTTCATTTTAAGATTAGGGACAACAAGTGTCATTTATGCGAATATGCTGCTAGCGAGAAATTTACCTTGGACGCGCATATCAAATCTGTTCATTTCAATATAAAGGAACACAAATGCGACTCATGCGAATATGTTGCGAGTGAAAAAAGATATCTTAATATTCACGTGAAATCCGTGCATTTAAAGATCAAGGAAAATAAGTGTCACTTATGTGACTTTGCCTGCAGCGTTAAAAGATATCTGGAAGCTCACATTAAATCCGTGCATTTAAAGATCAAAGATAATAAGTGTCACTTATGTGACTTTGCCTGCAGCGTTAAAGGATATCTGGAAGCTCACATTAAATCTGTTCATTTAAAAATCAAGGATAACAGATGCCATCTATGCGAGTACGGAACTAGTAGAAAAGGTACCCTTCAGAGACACATTAACTCTGTTCATTTGAACATCAAAAAATACAAGTGTGAACAATGTGAATATTCTGCGAGTGAGAAACTCAAACTTGATCGTCATGTTAAGGCCGTTCATTTCAAAATTAAGGAACACAAGTGTCACTTTTGCGAATATGCTGCTAGTGTGAAAAGTAACCTTGATGTGCACATAAAATCTGTCCATTTAAATATCAAGGAACACAAGTGTCACCTATGTGATTTTGTTACAAGTAGAAAAGATGTCCTTCAGAGACATATCGACTCCAACTCCAATCATTTACATCTCAAGAAAAACAAATGTCATTGA
- Protein Sequence
- MGDCSFEIQGEIHIGVDDVKLEEKLGVIDVSEQFIDEEGVHEREEYVNKIESSLNCLVEETPQDSLMNNFESVHLDKSYVGDCPASETHTQCHNTGSLKDQKVHVKSEHSSIKDHKCDLCDFVTRYKKNLALHIKSVHSNIKDYGCDLCEFVTSRKGDLNMHMKTVHLKIEEHQCHLCEYSSRHKKELEIHVKSFHLNAKKLECHLCDYNTNRKISLKKHVDSVHLKIKMHKCHLCDHAASDKGKLNIHIKSVHFKIRDNKCHLCEYAASEKFTLDAHIKSVHFNIKEHKCDSCEYVASEKRYLNIHVKSVHLKIKENKCHLCDFACSVKRYLEAHIKSVHLKIKDNKCHLCDFACSVKGYLEAHIKSVHLKIKDNRCHLCEYGTSRKGTLQRHINSVHLNIKKYKCEQCEYSASEKLKLDRHVKAVHFKIKEHKCHFCEYAASVKSNLDVHIKSVHLNIKEHKCHLCDFVTSRKDVLQRHIDSNSNHLHLKKNKCH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349516;
- 90% Identity
- -
- 80% Identity
- -