Csep014956.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015574.1:271948-275846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.003 0.51 12.1 0.4 1 23 121 144 121 144 0.95 2 16 0.00093 0.16 13.7 0.4 2 23 151 173 151 173 0.93 3 16 4.4e-05 0.0074 17.9 1.5 1 23 179 202 179 202 0.90 4 16 0.00046 0.078 14.7 0.6 1 23 208 231 208 231 0.95 5 16 0.017 3 9.7 4.4 1 23 237 260 237 260 0.97 6 16 0.0076 1.3 10.8 0.9 1 23 266 289 266 289 0.93 7 16 0.00024 0.041 15.6 0.5 2 23 299 321 298 321 0.95 8 16 0.028 4.7 9.1 0.3 1 21 327 347 327 348 0.96 9 16 0.00054 0.091 14.5 1.2 2 23 521 543 520 543 0.96 10 16 0.0003 0.051 15.2 1.0 1 23 549 572 549 572 0.98 11 16 0.00018 0.031 15.9 1.4 1 23 578 601 578 601 0.97 12 16 0.036 6.1 8.7 0.5 1 23 607 630 607 630 0.96 13 16 0.0058 0.98 11.2 0.2 2 23 637 659 636 659 0.95 14 16 0.19 31 6.5 0.5 2 23 663 685 662 685 0.96 15 16 0.0011 0.18 13.5 1.6 1 23 691 714 691 714 0.95 16 16 0.009 1.5 10.6 3.0 1 23 720 743 720 743 0.97
Sequence Information
- Coding Sequence
- ATGGAACATTCTATTGAAGAAGAGGCAGTACATATTGCTCATGATGGTGTGAAGTTAGAAGGAAATTCCGGGATTGTAGACGTTTTTGAACAATTTATAGATGAAAAAGGAATTCATGGTAGAGAAGAATATATAATCAAGAATGAAGAAAGTGACTCATGTTTATCAGATACAAAAATTGTTACAAATCAATCATCAACTGCCTCTATTACAAATGAATCATCTCAAATGTTAGAGACACTGAAATACTCGGAATCCCCTCAGGTGGAGAAGTGTACAACTCAAGTGGATGATTTTGAGACAAATAATGAAGAGAGCCGTACAATACATGCAAGATCTTCTCATTTGAAAATTGAGAATCACAAGTGTGCCTCATGTGATTACGTTACGAATAAAAAAGATGCCCTTGAAAATCACATTGATTCTGTCCATTTAAATATGGAGAAAAATGAATGTAACTTGTGTGGATATGCTGCAAGGTATAAAAGTCAACTGAAAAAGCATTTCAACCTTGTTCATTTGAATATAAAAGAGCACTCGTGTCACATCTGTGATTATGTTACGAGTAGTAAAGGAAACCTTCGAAAGCATGTCGACGGTGTTCATTTAAATATAAAAAAGCACAAATGTAACTTATGTGATTATGCTGGAAGTAGAAAAGGTGACCTTAAAAATCATGTCGACTCTATTCATTCAAACATCAAGGAACATAAGTGTCACTCATGTGAATATGCTACAAATAAGAAAAGTTCCCTCGACAGACATGTAAAATCTATTCATTTAAACATTAAGGAACATAAGTGTCATATATGTGATTACGCTACTAGTGTTAAAAGTCGCCTTGGTATACATATAGGGTCAGTTCATGTGAAAGAATCTTCTCGTTTGGAACTCAAGTGTGATCTATGTGAGTTTGTTACAAGTAGAAAAGAGTACCTTAAGAAGCATATCAAAGCGGTTCATTTAGATAACAAGAGATACAAGTGTCACTTATGTGAATATGCTACAGGTGCAAATAAGGAGCTGAAAATACACATAAAATCGGTTTTAGGAAAAAAAATGGATATGGGTGATATAAAAGAAGAGGTGCATATTATCCACGATGTGAAGTTAGAAGAGAAGTTAGCAGTTTTTGAACAATTTATGGATGAAAATGGAGATCATGATAGAAAATATATAATTAAGAATGAAGAAAATAACTCAAATTCCTTAGTTATGGAAGTCGATGCAAATCATTCACCTGCCTCTTTTAAGAAAGAAATACCTGGAGTATTAGATCTGGTGGGCAATGAATCTCTTCCTTTGAATATCAAGTGTGACTCTTTTAAAGAAGAAAAGCCTCAAGTATTAGATCCTCTGATGAATTACTCTGAAACGATTCACTTGAAGCAGTATGAATGTGATAACAGTCGTCTTCCAAGTGAAGAAAATTATCTTGAAACTGGCATACAATGTAATAACGCTTCCAGTCTGGAAGATCACGATAAACAATATGCTGAGAATGAAAAATATGTCTTGGAACAACATATCGAGAAAGTTCATGTGAAAATCAAAGAAAACAAGTGTCATCTATGTGAATATGTTACAAATAATAAAACTGCCCTCCAACGACATATCGACTCGGTTCATTTGAGAATTAAGGATTACAAGTGCCACTTGTGTGAATATGCTGGTAGTACCAAAGGGGTCCTTAAAAGACATATAAAATCTATTCATTTGAAAATCAAAGATCACAAGTGCGATTTGTGTGAATATGCTGGGGCTTCCAAATATAACCTTAGGAATCATATGAAAATTTTCCATTTGAGAATTAAGGATCACAAATGTGACTTGTGTGAATTTGCTACAATTACGAAAGCAAGACTTGAATCACATGTGAACTCTGTTCATTTGAAAATTAATGAAACGGAGTGTCTCTTGTGTGAATATGCTGTAAATAATAAAAGGGACCTTGAAAGACATGTAAAATCCGTTCATTTGAAAAATAAGTGCCACTTGTGCGAATATGCTCCGAAAGCCAAATGGGACCTTGAAAAACATATAAAATCTGTTCATTTGAGAATTAAAGATCACAAGTGCGACATCTGCGAATTTGCTGCCAGTACCAAATGGGACCTTATGAAACATATGAAATTTTTTCATTTGGGAATTAAGGATCACAAATGTCACTTGTGTGATTATGCTACTATTAAGAAATCACGACTTGCATCACATGTAAAATCTGTTCATTCAACAATTAAGGATGAAAAATAA
- Protein Sequence
- MEHSIEEEAVHIAHDGVKLEGNSGIVDVFEQFIDEKGIHGREEYIIKNEESDSCLSDTKIVTNQSSTASITNESSQMLETLKYSESPQVEKCTTQVDDFETNNEESRTIHARSSHLKIENHKCASCDYVTNKKDALENHIDSVHLNMEKNECNLCGYAARYKSQLKKHFNLVHLNIKEHSCHICDYVTSSKGNLRKHVDGVHLNIKKHKCNLCDYAGSRKGDLKNHVDSIHSNIKEHKCHSCEYATNKKSSLDRHVKSIHLNIKEHKCHICDYATSVKSRLGIHIGSVHVKESSRLELKCDLCEFVTSRKEYLKKHIKAVHLDNKRYKCHLCEYATGANKELKIHIKSVLGKKMDMGDIKEEVHIIHDVKLEEKLAVFEQFMDENGDHDRKYIIKNEENNSNSLVMEVDANHSPASFKKEIPGVLDLVGNESLPLNIKCDSFKEEKPQVLDPLMNYSETIHLKQYECDNSRLPSEENYLETGIQCNNASSLEDHDKQYAENEKYVLEQHIEKVHVKIKENKCHLCEYVTNNKTALQRHIDSVHLRIKDYKCHLCEYAGSTKGVLKRHIKSIHLKIKDHKCDLCEYAGASKYNLRNHMKIFHLRIKDHKCDLCEFATITKARLESHVNSVHLKINETECLLCEYAVNNKRDLERHVKSVHLKNKCHLCEYAPKAKWDLEKHIKSVHLRIKDHKCDICEFAASTKWDLMKHMKFFHLGIKDHKCHLCDYATIKKSRLASHVKSVHSTIKDEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -