Csep020143.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015582.1:15393255-15395454[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.053 8.9 8.2 0.7 2 23 112 134 111 134 0.92 2 13 1.5e-05 0.0025 19.4 2.3 1 23 180 203 180 203 0.96 3 13 0.0048 0.82 11.5 3.4 1 21 244 264 244 265 0.93 4 13 0.025 4.2 9.2 0.2 2 21 285 304 285 305 0.94 5 13 3.4 5.7e+02 2.5 2.5 2 23 348 370 348 370 0.88 6 13 4.8e-05 0.0081 17.8 1.6 1 23 421 443 421 443 0.95 7 13 2.1e-06 0.00035 22.1 1.9 1 23 449 471 449 471 0.96 8 13 2e-07 3.4e-05 25.2 0.3 1 23 477 500 477 500 0.97 9 13 4.3e-05 0.0073 17.9 1.2 1 23 508 530 508 530 0.99 10 13 8.1e-06 0.0014 20.2 2.6 1 23 536 558 536 558 0.97 11 13 0.0028 0.47 12.2 3.2 1 23 564 587 564 587 0.96 12 13 0.00036 0.061 15.0 5.1 1 23 601 623 601 623 0.97 13 13 1.2e-06 0.0002 22.9 3.2 1 23 629 652 629 652 0.96
Sequence Information
- Coding Sequence
- ATGAATAAAACAACTTGTTGTGTGTGTTTCAAAGGAAATGCTCCTATTCCATTGAGTGTTAGCGATTCTAATAACGAAACTATTTCATCCAAATTACGAAAAGTTGTTTCAGAAGTGCCATGGGAGGACACTTTTACAATATGCCCCCAATGTTTGAAGACGCTGGATATTGTGTTAGAATTCAGAAATGCATGTATAAAATCGAGCCTTATACGATTAGAACAAGGGGAATCTGAATCAACAAATGAATCTCATATAAAACAGAATGGGAGTAGCAGTGATGAAGAAATCAAAGAAGTAACAGGAGATAGTTCAGAGCGAACATTAGCTGTTACTTGTGAAATTTGTAAAGTTGAGCTAAATTCTAATGAACATTTATACAAACATAATAAAGAAATACATCAGCACCGTTATGAGAATGGTTTACTGTGTGTTGAAGAAAAAGATAGAGTACCACAAGAAATGAATGATGATTATTTTTCTGGTGATAATGAAAGTTTTTCTATTAATGAAGGCTTGGTTGAAAATTCTGATGTGTTTATATGTTTTCACTGTAATAAATCATTCAAAAGAAAAATATTGCTTGCTGAACATATACAAGTCAAACACAGTAAGGAAAAGATTGTCAAGAAAGAATCTACAGATTCAAGTAGCGATGAAAGGCCAATTGACAATATCCACTGTTTACAAACTTCTGATGATAAATTGGATAGTGACAAAAAAGAACTGTTTATATGTTCCAAGTGTAATAAATGTTATAAAAATAAAAAAGTAATGTTTAATCATATGGTCACCTGTGATGGAGTAAAAAGACATTCTAAAATAAATTTCACAAAGGATTTCTCTAAGAATGAGTGTGAAAACTGTGGAAGATTTTATACAACAGTAAAAATATTGAGAGCACACATGAAACAGTGCAAAACCAAAGTTTCATCAATGCAAGAAGATCGATGTTATATCTGTGATATGGTTTTAAAATGTTATGAAGATAAGTGTGAGCATGTTTTGAATGAGCATAACATTAATTTAAAAATCAACAATACATGCCAATATTGCTATAAGCAATTTTTATGCAATGAAAGTTTACAAACTCATATGGAAGATATGCACAAAAACAAGGGAGAAATATGGAAAAAAATTAAAAATTATGTTGAAAGAAGCTACTCTTGTGAAGTGTGCTCAGTTATTTTTGGTTATGTTAAAGAAGTAATCGAACATTGCGTTAAAGAACACCATATGGATGCAAAATCAGTTAAACCGTATCTATGCGATAAATGTAACACCCGCTTCACATCATCTGCGAATTTGATTCAGCATAAACAGTACCACAAGGGAGAACGTACCCACGTATGCAGTTTTTGTGGAAAAAGTTTCATTACTAAGAGTGATCTGACAGTTCACGAGTACACCCATTTGAACCGACGAAACTACAAGTGTGAAATATGCGAAAAAGCTTTCAATACCAACAAGAACCTGCGGTCTCACATCCTAGTCGTTCATACCGATGCGAGTTTATGGAAATACCAGTGTAATTTGTGCGATAAAAAGTTTCCTTTGAAATCCGGCTACGACCAACATATCAAGAGACACTCAGGCGATAAGAGATTTAAATGTTTAGTTTGCGAGAAATCTTTCATCAGCAGCAGCGAGCTGAAGAAGCACAAGAAATTCCATTCGGACGAGAGAGCTTTCAAATGTTCCCACTGCAACAAGGAATATAAAGACCGTAGGGTGTACGAGATACATCTAACCAAAGTTCATGGTATCGGTAATGCGAAGATACCTATTCGAGTGAGGAAGTTTGCATGTCATATTTGTCCGGGGACCTTTTTCGATAAGCAGAAATTGTTCAGGCACATGTGTACACATACGGGGATCAAACCGTTCGTTTGTAATATTTGTAATAAAAGGTTCAGTGATAAATCGTATTTGAAGCATCATTCTAAAGTTGTGCATAACGTTATGGACGTGGAAAAGAGTGAGGTGCAGCGAGGAAGTTCATGA
- Protein Sequence
- MNKTTCCVCFKGNAPIPLSVSDSNNETISSKLRKVVSEVPWEDTFTICPQCLKTLDIVLEFRNACIKSSLIRLEQGESESTNESHIKQNGSSSDEEIKEVTGDSSERTLAVTCEICKVELNSNEHLYKHNKEIHQHRYENGLLCVEEKDRVPQEMNDDYFSGDNESFSINEGLVENSDVFICFHCNKSFKRKILLAEHIQVKHSKEKIVKKESTDSSSDERPIDNIHCLQTSDDKLDSDKKELFICSKCNKCYKNKKVMFNHMVTCDGVKRHSKINFTKDFSKNECENCGRFYTTVKILRAHMKQCKTKVSSMQEDRCYICDMVLKCYEDKCEHVLNEHNINLKINNTCQYCYKQFLCNESLQTHMEDMHKNKGEIWKKIKNYVERSYSCEVCSVIFGYVKEVIEHCVKEHHMDAKSVKPYLCDKCNTRFTSSANLIQHKQYHKGERTHVCSFCGKSFITKSDLTVHEYTHLNRRNYKCEICEKAFNTNKNLRSHILVVHTDASLWKYQCNLCDKKFPLKSGYDQHIKRHSGDKRFKCLVCEKSFISSSELKKHKKFHSDERAFKCSHCNKEYKDRRVYEIHLTKVHGIGNAKIPIRVRKFACHICPGTFFDKQKLFRHMCTHTGIKPFVCNICNKRFSDKSYLKHHSKVVHNVMDVEKSEVQRGSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -