Csep014307.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015574.1:366826-370861[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.078 13 7.7 1.0 1 23 112 135 112 135 0.94 2 24 0.15 26 6.8 4.3 1 23 141 164 141 164 0.96 3 24 0.00013 0.022 16.4 1.2 1 23 170 193 170 193 0.96 4 24 3.5e-05 0.0058 18.2 1.9 2 23 200 222 200 222 0.96 5 24 0.0017 0.3 12.9 4.3 1 23 228 251 228 251 0.97 6 24 0.0052 0.87 11.4 0.3 1 23 257 280 257 280 0.97 7 24 0.029 4.9 9.0 4.4 1 23 286 309 286 309 0.97 8 24 0.0053 0.89 11.3 4.4 1 23 315 338 315 338 0.98 9 24 0.00077 0.13 14.0 1.1 1 23 344 367 344 367 0.98 10 24 0.34 57 5.7 4.3 3 23 375 396 375 396 0.98 11 24 0.023 3.9 9.3 6.3 1 23 402 425 402 425 0.97 12 24 0.00053 0.089 14.5 1.6 1 23 431 454 431 454 0.97 13 24 0.046 7.7 8.4 2.0 1 23 460 483 460 483 0.95 14 24 0.00046 0.078 14.7 1.4 1 23 489 512 489 512 0.98 15 24 0.0016 0.27 13.0 3.7 1 23 640 663 640 663 0.97 16 24 0.052 8.8 8.2 1.1 1 23 669 692 669 692 0.97 17 24 0.0021 0.35 12.6 2.3 1 23 698 721 698 721 0.95 18 24 0.013 2.2 10.1 0.3 1 22 727 748 727 750 0.91 19 24 0.016 2.7 9.8 1.1 2 23 757 779 756 779 0.97 20 24 0.0027 0.45 12.3 2.6 1 23 785 808 785 808 0.96 21 24 0.045 7.7 8.4 0.3 1 23 814 837 814 837 0.97 22 24 0.0035 0.59 11.9 1.4 1 23 843 866 843 866 0.97 23 24 0.22 38 6.2 0.4 1 23 872 895 872 895 0.97 24 24 0.00023 0.038 15.6 3.6 1 23 901 924 901 924 0.96
Sequence Information
- Coding Sequence
- ATGGATACAGGTAGACAATGTGTTAAAATTGAAGAAGAGGTGCATATTGTGGGTGACGACATTAAGTTAGAAGAAAAATTAGATGTTCTTGAACAATTTGTAGATGAACAAGGAGTTCATGGCAGAAAAGAATATATAAGCAAGAATGAAGAAAGTGACCCAAATAACTTAATCACAGAAACTGTTGCAAATCAATTATCAACAGCGTCTTTTACAAAACTATTGCCCCAAATGTTAGAAACACTGAAAGACTCCGAATGGGCTCACTTGGAGACAGATTATAAAGAGAGCCTTATGATACCTACAAAATCCGTTCATTTGAATATTGAAGATCACAATTGCACCTTTTGTGATTTTATTACAAATTCAAGAGATGTCCTTCAAAACCATATTGATTCTGTTCATTTGAATATAAAAGAACACAAATGTCATTTATGTGAATATACTACGAGTAGAAAATTCCTCATTGGGAGACATGTTAAATCTGTTCATTTGAAAATCAAGAATCACCAGTGTAACTTGTGCGATTATGTTACAAATAGAAAAGAATCCCTTCGAAGTCATATTGATTCTGTCCATTTAAATATCAGGAGAAATGAATGTCACTTTTGTGAATATGCCTCGAGTAATAAAAGTAACCTCGAAAAACATATGAAGTCAGTTCATTCGAATATAAAAGAACACAAGTGTCACCTATGTAAGTATGATACAACTTCCAAAGCCAACCTGAGACAGCATGTCAACTCGGTTCATTTAAATATCAAGAAATATAAATGCCAATTATGTGAATACGCTGCAAGTCAAAAAAGTACTCTCGACATGCATGTAAAATCGGTCCATTTGAAAATTAAGGAACATAAATGTCACTTATGTGATTATGCTGCGTGTAAAAATCAGGATCTGGCAGTACACATAAAATCTTTTCATTTGGATATCAAGGAGCACAAGTGTCATCTATGCAAGTATTCCACGAATGTTGAACCTTACCTTAAGAAGCATATCAAAACGGTTCATTTAAATATCAAGAAATACAAGTGTCACTTATGTGAATATGCTTCGAGTGTGAATAAGGACCTGGAAGTACACATAAAATCTTTCCATTTGAAAATAAAGGAGCTCGGCTGTCATTTTTGCGAGTTTGTCACAAATATAAAATGTGACCTTCGGAGGCACATCAACACGGTTCATTTAAATATCAAGGAGCACAAATGTCACTTATGTGATTATGCCGCGAACGAGAAACACCACCTTGAGAGACACGTAAAATCTGTTCATTTCAAAATAAAGGATCACAAGTGTCTCCAATGCGATTATGATACAACCAGTAAAAATCTACTTCAGAGGCATATCAACGTGGTTCATTTGAATATCAAGAAACACAAGTGTCAGTTCTGTGATTTCGTTACGAGTAGAAAAGATAGGCTGGGAAATCATGTCAGCTCTGTTCATTTAAATATCAAAGAGCATAAGTGTGACTCATGTGATTATGCCACAAGTGTGAAATTTAACCTCAATGAACACATTAAAACAGTTCATTTGAAAATAAAGACACACAAGTGTCCCTTATGTGAAGTGAAGTTGAAAGAAGAAAAGATCGTGGACATTTTTGAACAATTTATAGACAAAGAAGAAGTTTTTGATAGGGAGAAATATATAATTCGGAATGAGGAAACTAACTCAAATTTCTTGATTAAAAAAGTCGATGCAAGTTTGTCAACTGCCTCGTTTACCGAAGAAGTATCATATCCACCAAGTAATAAACTCCAACCACTGCTTCACATGGAACAGTGTGAATTTCCTAAATGTGAAAATGATTATTCTTCAGGTGAAGAGAAATATCTTGAGGAGCACATACAGTATGATCAAACAGCCAGTATTGAAAGTGGCGTAAACCCTATTCATTTGAATATTAAGCAACACAAGTGTCATCGATGTGAATTTGCTGGGAGTGTAAAATCTGAACTCAAAAGACACATGAAATCGGTTCATTTGAGAATTAAGGAATACAGGTGTCACTTATGTGAATATACAGCGAATGTTAAACCAAAACTTGATAGACACGTAAAATCTGTCCATTTGAAAATTAAGGAACACGAATGTCATTTATGTGAGTATGCTACAAGTAGGAAAGAGTACCTTCAATCACATGTCGAGCGAATTCATTTAAATGTTAAGAAATACAAATGTCAACTTTGCGAGTATGCTGCAAGCACTAAAGTGTACCTACAAAATCATGTTGACTTTGTTCATTTGAATATCAAGAAAAACAAATGTCACTTGTGTGACTATGCCGCCAGTGAGAAGAGTACCGTCCAAAAACATGTAAAATCTGTGCATTTGAAAATTAAAAAACACAAGTGTCATCTATGTGAGTTTGTTACGAGTAGAAAATGGGATCTTCAAAGTCATGTGGAGCGTGTCCATTTGGAAGTTAAGAGATACGAATGCCACTTCTGTGACTATGCTGCATTCTTGAAACCAGCCCTCGAAGTTCACATTAAATCTAATCATTTGAATATCAAGGAACATCGGTGCCACTTATGCGAATATGCTGCGAATAGAAAAATGGATCTTGAAGTACACATCAAATCTGTTCATTTGAAAATTAAGGACTACAAGTGTCAATTATGTGAATTTGCTGCTAACGTAAAACAAAAACTTGATAGACACGTGAAATCCGTTCATTTAAAAATTAAGGGACACAAGTGTCAGCATTGTGATTTTGTTACGAGTAGAAAAGACGCTCTTCGAAAGCATGTTGAACGTGTTCATTTGAATATCAAGAAACAGGAAAGTAGCCTTTGTGAATATGCTCCCTGTGAGGAACATCCAACAACAAGCAAGATCTGTTCAATTGAAAATTGA
- Protein Sequence
- MDTGRQCVKIEEEVHIVGDDIKLEEKLDVLEQFVDEQGVHGRKEYISKNEESDPNNLITETVANQLSTASFTKLLPQMLETLKDSEWAHLETDYKESLMIPTKSVHLNIEDHNCTFCDFITNSRDVLQNHIDSVHLNIKEHKCHLCEYTTSRKFLIGRHVKSVHLKIKNHQCNLCDYVTNRKESLRSHIDSVHLNIRRNECHFCEYASSNKSNLEKHMKSVHSNIKEHKCHLCKYDTTSKANLRQHVNSVHLNIKKYKCQLCEYAASQKSTLDMHVKSVHLKIKEHKCHLCDYAACKNQDLAVHIKSFHLDIKEHKCHLCKYSTNVEPYLKKHIKTVHLNIKKYKCHLCEYASSVNKDLEVHIKSFHLKIKELGCHFCEFVTNIKCDLRRHINTVHLNIKEHKCHLCDYAANEKHHLERHVKSVHFKIKDHKCLQCDYDTTSKNLLQRHINVVHLNIKKHKCQFCDFVTSRKDRLGNHVSSVHLNIKEHKCDSCDYATSVKFNLNEHIKTVHLKIKTHKCPLCEVKLKEEKIVDIFEQFIDKEEVFDREKYIIRNEETNSNFLIKKVDASLSTASFTEEVSYPPSNKLQPLLHMEQCEFPKCENDYSSGEEKYLEEHIQYDQTASIESGVNPIHLNIKQHKCHRCEFAGSVKSELKRHMKSVHLRIKEYRCHLCEYTANVKPKLDRHVKSVHLKIKEHECHLCEYATSRKEYLQSHVERIHLNVKKYKCQLCEYAASTKVYLQNHVDFVHLNIKKNKCHLCDYAASEKSTVQKHVKSVHLKIKKHKCHLCEFVTSRKWDLQSHVERVHLEVKRYECHFCDYAAFLKPALEVHIKSNHLNIKEHRCHLCEYAANRKMDLEVHIKSVHLKIKDYKCQLCEFAANVKQKLDRHVKSVHLKIKGHKCQHCDFVTSRKDALRKHVERVHLNIKKQESSLCEYAPCEEHPTTSKICSIEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -