Csep037038.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015579.1:3160173-3162949[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.2 34 6.4 0.8 1 23 90 112 90 112 0.97 2 15 0.043 7.2 8.5 0.3 2 23 118 139 118 139 0.96 3 15 3.4e-06 0.00058 21.4 2.4 2 23 146 167 145 167 0.96 4 15 5.9e-07 0.0001 23.8 1.0 1 23 173 196 173 196 0.98 5 15 0.00012 0.02 16.5 2.4 2 23 203 225 202 225 0.97 6 15 0.027 4.5 9.1 2.8 3 23 234 254 232 254 0.95 7 15 0.0049 0.82 11.5 0.4 1 23 259 282 259 282 0.93 8 15 0.031 5.2 8.9 1.0 5 23 288 307 286 307 0.91 9 15 3.3e-05 0.0055 18.3 2.8 3 23 315 336 313 336 0.95 10 15 4.2e-06 0.00071 21.1 0.4 2 23 344 365 343 365 0.98 11 15 1.2e-06 0.00021 22.8 0.4 1 23 369 391 369 391 0.97 12 15 0.00092 0.16 13.7 1.4 1 23 397 419 397 419 0.98 13 15 0.00042 0.071 14.8 4.4 1 23 425 447 425 447 0.96 14 15 0.062 10 8.0 5.2 1 23 453 475 453 475 0.97 15 15 0.73 1.2e+02 4.6 6.8 1 19 481 499 481 506 0.96
Sequence Information
- Coding Sequence
- ATGAATGATTCAAGTAGTATGAATGTTTTCAACACAGGAGATTTATTAACAAGCGCCAAGGAAATGACTACTTGTTTTAAAACAGAACCTCCTGATACTGAAGATGATGAATCAAAGCTAGGCACAGAAAGTTCAAGTGAATATGAAAACACCAACACAAAAGTTAAAATTGAAAAAGAATGGCCAGAACTTGAAAGTACACTTTCTAGTGAAGGACCCCAAGCAAATGACTCAAAGATCATTAAGTTAGAAGGAAATACAACACAATATCGATGTGGCATATGCGAGTTTATCAGCGATACTTTTTATGAAATGAGGGAACATAAGAAGTTGCATAATATTGAAAAGAGAACTTGTGCTATGTGTGGAATGGTATGCCAGAGTATAGGTAAATTAGAGGTGCACCAAAATGCACATTTTGGGATCAAACCGTGTGTTTGTGATCAATGTGGAAAGTCTTACAGTTCTTCAACACAGCTGAAAATTCATAAAAGGATTCATACTGATGAGAAGAGATATAAATGTAATCAATGTGATGAAGCATTCCGATATAATGGTACATTGAGGAGTCACATAAGAATGACTCACACAAAAATTTTATTGACCACTTGTAAAGTGTGTTCAAGATATTGTGAAACTCAAGAAGATCTCAAGGAACACATGAGAACGGTACATCCAAAAGAAAAGAAATCAATTAACTGCCAACTATGTCAAAAGACTTTCAAAAGTGAACAGTTACTATCTTGTCATTTAAAGGTCCATACAGAATTGAAATTTCCTTGCGAGTTTTGTCAAAGAATCTATCCAACATTGTATAGGTTGAAGAAACACGTCGGACGAGCACACATTCCCAATGTTTGCGAGTGTAAACAAGTATTTTATGACCGATCTGAGTTTACCAAGCACAACAAAGAATTCCATAAAACAGAGGAGCCAACACATTGTCAGTATTGCAATAAAAACTTCGATAAACCGAAGAACTTGACTGAACACATCAGACTTCAGCATAGGGCTAATGGGAAAGTTAATAAGTGTAAAATATGTGAAAAGGAATTCATTAATGCTTCCTTGTTGAGGAACCATGTGAAAATTCATGTTAAGAGTTTCAAATGTGAATATTGTGATAAGATATTCGGTTCGAGGTACAATTTGCAGATTCATCTGGTGGTTCACACTAAAGAGAGAAAATTTCAATGCGATGAATGCGGTAACTATTACGGAACCAAGACCGCCCTGAAAAACCATAAGTTCACCCACTTAGAGGTGAAAAACTTCACGTGTGATATTTGCAACAAGAAATTCAAGAGCAACCATAGGCTGTATGCTCATAAATCGTTGCACGAAGCTGAAAAGAAACATGAATGTGAGATATGTCACGCAAAGTTCACAATCAAACAATATTTGAATTTCCACATGAAAAAACATTCTAAAGAGAAACCGTTCGAGTGCAAACCATGTCAGAGGAAGTTTAAACATAAGAGATCATTCGAGAAGCACTGCCTCCTTCAAAGACACAAAAACGCGGTCAGGACTTGGGTCAGAGAGGGGGATTCTGACGATTCGGAGAAAAATTCCTCGATGATGGATTGCTCGGAAAACGGACAGGACGAAACAACAAATGATTGGACATCTAGCACGGAATCGAATCAGATGGGTTTTGAGGAAGTGAAACTTGAAGTTAAAGTAGAACCCAAAAATGTAGATTGA
- Protein Sequence
- MNDSSSMNVFNTGDLLTSAKEMTTCFKTEPPDTEDDESKLGTESSSEYENTNTKVKIEKEWPELESTLSSEGPQANDSKIIKLEGNTTQYRCGICEFISDTFYEMREHKKLHNIEKRTCAMCGMVCQSIGKLEVHQNAHFGIKPCVCDQCGKSYSSSTQLKIHKRIHTDEKRYKCNQCDEAFRYNGTLRSHIRMTHTKILLTTCKVCSRYCETQEDLKEHMRTVHPKEKKSINCQLCQKTFKSEQLLSCHLKVHTELKFPCEFCQRIYPTLYRLKKHVGRAHIPNVCECKQVFYDRSEFTKHNKEFHKTEEPTHCQYCNKNFDKPKNLTEHIRLQHRANGKVNKCKICEKEFINASLLRNHVKIHVKSFKCEYCDKIFGSRYNLQIHLVVHTKERKFQCDECGNYYGTKTALKNHKFTHLEVKNFTCDICNKKFKSNHRLYAHKSLHEAEKKHECEICHAKFTIKQYLNFHMKKHSKEKPFECKPCQRKFKHKRSFEKHCLLQRHKNAVRTWVREGDSDDSEKNSSMMDCSENGQDETTNDWTSSTESNQMGFEEVKLEVKVEPKNVD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00999020;
- 90% Identity
- -
- 80% Identity
- -