Csep019971.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015582.1:8558976-8563844[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00021 0.035 15.8 1.2 1 23 77 100 77 100 0.96 2 22 2.2 3.6e+02 3.1 0.0 1 22 103 124 103 126 0.86 3 22 0.0017 0.28 12.9 1.2 1 23 132 155 132 155 0.96 4 22 1.8 3e+02 3.4 0.2 1 23 161 184 161 184 0.89 5 22 0.00013 0.022 16.4 1.0 1 23 190 213 190 213 0.97 6 22 0.00072 0.12 14.1 0.5 1 23 219 242 219 242 0.95 7 22 0.0017 0.28 12.9 0.8 1 23 245 268 245 268 0.97 8 22 0.32 54 5.7 3.4 1 23 301 324 301 324 0.96 9 22 0.017 2.9 9.7 0.1 1 23 328 351 328 351 0.95 10 22 0.00016 0.027 16.1 1.3 1 23 386 409 386 409 0.97 11 22 0.15 26 6.7 3.9 1 23 433 456 433 456 0.93 12 22 0.0012 0.2 13.4 0.8 2 23 460 482 460 482 0.95 13 22 0.00067 0.11 14.2 0.1 1 23 488 511 488 511 0.97 14 22 0.0021 0.36 12.6 4.5 1 23 517 540 517 540 0.97 15 22 0.00014 0.023 16.3 3.4 1 23 546 569 546 569 0.98 16 22 0.00013 0.021 16.5 0.3 1 23 575 598 575 598 0.94 17 22 0.005 0.84 11.4 2.0 1 23 604 627 604 627 0.96 18 22 0.005 0.84 11.4 0.9 1 23 633 656 633 656 0.96 19 22 0.27 46 6.0 3.6 2 23 664 686 663 686 0.95 20 22 2.5e-05 0.0042 18.7 1.0 1 23 692 715 692 715 0.97 21 22 0.84 1.4e+02 4.4 2.5 1 23 715 738 715 738 0.92 22 22 0.00034 0.057 15.1 3.8 1 23 744 767 744 767 0.97
Sequence Information
- Coding Sequence
- ATGAAGAGAGCATTGAGAGAAAATCGCGAACTACGGAACATGATCGAAAAGGAATTAGACAGACGTAAAAAACAAATTAAAACAGATTCCAACATCGAAGAAGATGATCAGGATCAGGAAGGCGAATCTGAAAAAAAGCCTTTCAAGTGCGACCACTCCACCTATTCCGCTTATTATGAATGCCACGTCAAAGGCCACATCGATTCTGTCCATATGAAGCTGAAGCCGCACAAATGCGACCTTTGCGACCAGGCCTACTATCGCGGAAGCGACCTCAGAAGACACTTGGCCAAAATGCATTCCCGATTCGCTTGCGACGTGTGCGATCTGATCCTAGATTTCCAGGAGGAGGTGAAATCGCACAAGGACGCCGAGCATTCCGGTCCTAAACCCTTCAAATGTCGTTTCTGCGAATACTCTGGACGTCGCAAGGCGGATTTGAACAAGCACGTGGCGCGCACTCATTCCGACCCGAAACAGTACGTGTGCGGTAAATGCGACTTTCAATCGGAGTGGAAATTGGCCCTCACCAAACACATAACATCCGCACATCCCGGTTCTGCGCAATACGACTGCGACGAATGCGACTTCACATCGACTCGTAAGAAGGATTTTGAGAGCCACTTACGTTCAGTTCATTCTGGTTCTTTGAGGTACAGTTGCGAAAAGTGTGATTATTCTTCGGCGAGGAAGAAGGATGTCAGGAGGCACGTGGATTCGGTTCACCCAAAATTCAAATGCGAGATATGCAAATATGTTTCGAATAAAGAGGAAGATTTCCGAACGCACCAAGATACTGTTCACAGAGAACGTAAACCTTACAATTGTCGCTTGTGTGAATTCGCTACCGACTGTGAGGATGATTTGGAAATACATAAAGATTCCGCACATTCCAAGCGGTACAAATGCGCCAGCTGTGATTTCTGTACGAAATGGAAGAAAGAGCTCAGGAAACACTTGGATGTCTTTCACACAGAAAAATATGAATGCGATTCATGTGAATTCGTTACGAATCAAGAAACCGACCTCCAAGCGCACCGAGATTCCATTCATTGCGATCCTGACACTCTCGACTGCAATCTATGCGAGTATATTGCGAATTGCACGAGTGACTTGAAAAAACATAAATCTTCAGTTCATCCTGACGCCCACAAATATAAATGCGACAAATGCGACTACTCTGCAAAAAGGCAAAGATTTCTACTGAAACACATGGATTCTGCCCATCCTGAATCCGAACGCGATGTTGATTCAGATTCAGAAAACGATGCTGTTACTGACGATTCCGATACTGAGCATAAATGCGACCAATGTGATTACGTTACGAAATGGAGAAAAGATCTCAGGAGGCACGTTCATCTAAATCATAAGCCGAATAGGTGCCGGCTGTGCGACTTTTCAACGAAAGAAAGTTATAACCTCCAAAGGCACATCGATTCAGTCCATCGCAACGCTTGGACTTTCAAATGCGAGTCTTGCGACTACGCCGCCAGCCAAAAGAAGGACCTTGAGGCGCACGTGCAATCAGTGCACGAGAATTCGAAACTTTTCAAGTGTACCTTATGCGACTACTCTTGCAATCGTAAAAGATATCTTGACCAACACACCAATTCCGTCCATTTGAAGCTGTATCAGTACAAGTGTCCAGATTGCGTGTATTCTACTAATAGGAGGCACCATCTAGACAGGCATATCCAGTCGGTTCATTCAAACGCGAAGGAATTTCAGTGTCCCTTATGCGAGCACGCGACAAATCAAAAGGGCAATCTTAAAATCCACATGGATGCTGTTCACTCGAAAGCAAACCTGTTCAAGTGTCATATATGCGATTTTTGCACAGCATATAACACAGAACTCTTGGGGCATATAGATTCAGTTCATTTCAACGAGAAAAAACATGAGTGTGCATTTTGTGATTATAGAACGAATAGGATTGGAGATCTCAGAAAACATGTAAATTCCGTTCATTCAACCTCGCAAAATACTATAAAGTGTCAGTCGTGTGATTATACGACAAATTGTTCACGGAATCTTAAGAGGCATACAGATACCGTACATCAGGAATACAAACCGTATAAATGTGAAATTTGCAATTATGCCACAGCTCACAAAAATAATCTCAAAAATCATGTGAATTCTGCTCATAAGTGTCACTTATGCGACTTTACCGCAGATCATGACGATGATTTAGGAAGGCATTTCGGCACTGTTCATCCTGATTTAGAGCTGTTTAAGTGTGATTTGTGTAAATATGTCGCAACTAGGAAAAACCATCTTAAACGACATTTACTTTCTTTCCACCCACAAATATGA
- Protein Sequence
- MKRALRENRELRNMIEKELDRRKKQIKTDSNIEEDDQDQEGESEKKPFKCDHSTYSAYYECHVKGHIDSVHMKLKPHKCDLCDQAYYRGSDLRRHLAKMHSRFACDVCDLILDFQEEVKSHKDAEHSGPKPFKCRFCEYSGRRKADLNKHVARTHSDPKQYVCGKCDFQSEWKLALTKHITSAHPGSAQYDCDECDFTSTRKKDFESHLRSVHSGSLRYSCEKCDYSSARKKDVRRHVDSVHPKFKCEICKYVSNKEEDFRTHQDTVHRERKPYNCRLCEFATDCEDDLEIHKDSAHSKRYKCASCDFCTKWKKELRKHLDVFHTEKYECDSCEFVTNQETDLQAHRDSIHCDPDTLDCNLCEYIANCTSDLKKHKSSVHPDAHKYKCDKCDYSAKRQRFLLKHMDSAHPESERDVDSDSENDAVTDDSDTEHKCDQCDYVTKWRKDLRRHVHLNHKPNRCRLCDFSTKESYNLQRHIDSVHRNAWTFKCESCDYAASQKKDLEAHVQSVHENSKLFKCTLCDYSCNRKRYLDQHTNSVHLKLYQYKCPDCVYSTNRRHHLDRHIQSVHSNAKEFQCPLCEHATNQKGNLKIHMDAVHSKANLFKCHICDFCTAYNTELLGHIDSVHFNEKKHECAFCDYRTNRIGDLRKHVNSVHSTSQNTIKCQSCDYTTNCSRNLKRHTDTVHQEYKPYKCEICNYATAHKNNLKNHVNSAHKCHLCDFTADHDDDLGRHFGTVHPDLELFKCDLCKYVATRKNHLKRHLLSFHPQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00349444;
- 90% Identity
- iTF_00349444;
- 80% Identity
- -