Csep015144.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015574.1:964750-974132[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.0003 0.051 15.2 2.2 1 23 109 132 109 132 0.97 2 31 0.17 28 6.6 4.3 1 23 138 161 138 161 0.97 3 31 0.00053 0.09 14.5 1.8 2 23 168 190 167 190 0.96 4 31 0.0052 0.88 11.4 0.9 1 23 196 219 196 219 0.98 5 31 3.5e-05 0.0059 18.2 5.0 1 23 225 248 225 248 0.97 6 31 0.2 34 6.4 2.6 1 23 254 277 254 277 0.97 7 31 0.0062 1.1 11.1 4.7 1 23 283 306 283 306 0.97 8 31 0.0032 0.55 12.0 3.1 1 23 312 335 312 335 0.97 9 31 0.0053 0.9 11.3 3.3 1 23 341 364 341 364 0.94 10 31 0.61 1e+02 4.9 1.6 2 23 372 394 371 394 0.97 11 31 0.0056 0.94 11.3 0.6 2 23 401 423 401 423 0.97 12 31 3.8 6.5e+02 2.3 1.2 1 23 429 452 429 452 0.87 13 31 0.021 3.5 9.5 2.2 2 23 458 480 458 480 0.97 14 31 0.065 11 7.9 2.1 1 23 486 509 486 509 0.98 15 31 0.0003 0.051 15.2 2.2 1 23 664 687 664 687 0.97 16 31 0.086 15 7.5 2.7 1 23 693 716 693 716 0.97 17 31 0.00063 0.11 14.3 2.2 2 23 723 745 722 745 0.96 18 31 0.0031 0.53 12.1 0.9 1 23 751 774 751 774 0.98 19 31 6e-05 0.01 17.5 3.5 2 23 781 803 780 803 0.97 20 31 0.4 68 5.4 2.2 1 23 809 832 809 832 0.97 21 31 0.58 98 4.9 5.8 1 23 838 861 838 861 0.97 22 31 0.062 10 8.0 0.8 1 23 867 890 867 890 0.97 23 31 0.0018 0.3 12.8 0.5 1 23 896 919 896 919 0.97 24 31 0.00048 0.08 14.6 3.3 1 23 925 948 925 948 0.98 25 31 0.0015 0.26 13.1 2.5 1 23 954 977 954 977 0.94 26 31 0.58 99 4.9 0.1 1 23 983 1006 983 1006 0.95 27 31 0.0056 0.94 11.3 0.6 2 23 1013 1035 1013 1035 0.97 28 31 4.2 7e+02 2.2 1.0 1 23 1041 1064 1041 1064 0.86 29 31 0.021 3.5 9.5 2.2 2 23 1070 1092 1070 1092 0.97 30 31 0.065 11 7.9 2.1 1 23 1098 1121 1098 1121 0.98 31 31 0.00011 0.018 16.6 0.4 1 23 1127 1150 1127 1150 0.97
Sequence Information
- Coding Sequence
- ATGGGTGATTTTAGTCTTAATATTGAAGGAAGGATTGGCGTTGATGATGTAAAGTTAGAAGAAAAATTAGGAGTCATTGACGTTTCTGAACAATTCATAGATGAAAAAGGAGTTCATGAAAGGGAAGAATATGTTTTCAAGAAAGAAGAAAGTTCCTCGAACAACCCAGTTACAGAAGACGATGCTTTCAGTTTTGAAGATCACAGAGAAGATTCCATAAATTCTGATCATTTGGATATTGAGGATCACAGCTGTGAATATGCGTCAAGAGCAAAATGTGAACTTGATGCACAATCCAAATCTGTTGATTTGAAAATCAAGTATCACAAGTGTGATTTATGTGACTTTTTCTCGAGAAGAAAAGGTAATCTTCAGAGTCATATCAACTCTATTCATTTGAAGATAAAGAATCACAAATGTCACATGTGTGACTATGCAGCGAGTGTGAAACATAAACTTGATACACATGTCAAGTCTGTTCATTTGAAAATTAAGGATCAAAAGTGTCATCTATGTGACTTTGCCACATTTCAAAAAAGCTCACTTCAGGCTCACATCAAATCTATTCATTTAAAATTGAGGAATTACAAATGCCACGTGTGTGAATATGCAGCGAACAATAAACGTACACTTGATGTACATCTAAAATCTGTTCATTTGGATATTAAGGATCACAAGTGTCACCTATGTGACTATGCCACCAGTAGAAAGAGCAAACTTCAACGTCATATCAAGTCTATTCATCTGAAGATAAAAAATCACAAATGCCACATGTGCGAATATGCTGCGAGTGAAAAACAAAAACTTGATTCACACGTGAAAACTGTTCATTTGAAAATTAAGGATCACAAGTGTCACCTATGTGACTATGCCACAAATGAAAAACACACACTTCGAGTACATATAAACTCCGTTCATTTGAAAATTAAGGATCACAAGTGCCACATGTGTGAATATGCTGCGAGTACAAAATATTCACTTCAAATGCATGTAAAATCTGTTCATTTGAATATAAAACCCCACAAGTGTAAGTTTTGTAATTATGCCACAAGTACGAAAGAATACCTTAACAGTCATGTTAATTTTGTTCATTTGAATATCAAACAGTTTAATAAGTGTAATCTGTGTGATTATGCTGCACATCATAAAGTGGTACTCGATCAGCACATCAAAACTGTACATTTGAAAATTAAGGATCGCAAGTGTCACTTGTGTGACTATGCTGCGAGTACTAAAAGTAGGCTTGAGATACATGTGAACAGTGTTCATTTGAATATCAAGAAGCACAAGTGCGATTTGTGTGACTATGCCGCGAATAATAAACATATTATCGAACAACATGTAAAATCCGTTCATTTGAATATTAAGGAGCAGTGCCATTTATGCGAGTACGCTGCAGGTAGCAAGCATAAACTCCAGAGGCATATCAACTCTGTTCATTTGAAAATTAAGGATCACAAATGCCACTTGTGTGAATATGCAGCGAGTGAGAAACGTAAACTTGATATACACATAAAAACCGTACATTTAAAAATCAAAGAATACAAATGTGAGCTGTGTCCTAACTTCGGCCTACCAGTTTATGACAGAAGAAACATCTCAATTCCGGTCATATTAAAAGATTTGGAAAATTGTGTACAGAGTCTAGATTTAGTTGACGAAGATAAGAATCTACTTAGGGCTAAAAACATCAATATAATAACAAATTTCTGTGTAAAGTTAGAAGAAAAATTAGGAGTCATTGACGTTTCTGAACAATTCATAGATGAAAAAGGAGTTCATGAAAGGGAAGAATATGTTTTCAAGACAGAAGAAAGTTGCTCTAACAACCCAGTTACAGAAGACGATGCTTTCAGTTTTGAAGATCACAGAGAAGATTCCATAAATTCTGATCATTTGGATATTGAGGATCACAGCTGTGAATATGCGTCAAGAGAAAAATGTGAACTTGATGCACAATTGAAATCTGTTGATTTGAAAATTAAGTATCACAAGTGTGATTTATGTGACTTTTTCTCGAGAAGAAAAGGTAATCTTCAGAGTCATATCAACTCTATTCATCTGAAGATAAAGAATCACAAATGTCACATGTGTGACTATGCAGCGAGTGTGAAACGTAAACTTGATACACATGTCAAGTCTGTTCATTTGAAAATTAAGGATCAAAAGTGTCATCTATGTGACTTTGCCACGTTTCGAAAAAGCACACTTCAGGCTCATATCAAATCTATTCATTTAAAATTGAGGAATTACAAATGCCACATGTGTGAATATGCAGCGAGCGATAAACGTACACTTGATGTACATCTGAAATCTGTTCATTTGGATATTAAGGATCAAAAGTGTCACTTATGTGACTTTGTCACAAGTAGAAAGAGCAAACTTCAACGTCATATCAAGTCTATTCATCTGAAGATAAAAAATCACAAATGCCACTTGTGCGAATATGCTGCGAGTGAAAAACAAAAACTCGATTTACACGTGAAAACTGTTCATATGAAAATTAAGGATCACAAGTGTCACCTATGTGACTATGCCACAAATGAAAAACACAAAATTCAAGATCATATCAATTCTTTTCATTTGAACATAAAGGACCACAAATGCGAAATGTGTGAATATGCGTCGAGTGAGAAACGTAAACTGGATGCACATGTGAAATCTATCCATTTGAAAATTAAGAATCACAAGTGTGACTTATGTGATTTTGCCACAACGGGAAAAGGCACACTTCGAGTACATATAAACTCCGTTCATTTGAAAATTAAGGATCACAAGTGTCACATGTGTGATTATGCTGCGAGTACAAAATATTCACTTCAAATGCATGTAAAAACTGTTCATTTGAATATCAAGGACCACAAGTGTAATTTTTGTGATTACGCCACTAGTACGAAAGAATACCTTAACAATCATGTTAATTTCGTTCATTTGAATATCAAAAAGTTTAAATGTGATCTGTGTGATTATGCTGCAAATCTCAAAGTGGTACTTGATCAGCACGTCAAAACTGTACATTTGAAAATTAAGGATCGCAAGTGTCACTTGTGTGACTATGCTGCGAGTACTAAAAGTAGGCTTGAGATACATGTGAACAGTGTTCATTTGAATATCAAGAAGCACAAGTGCGACTTGTGTGATTATGCCGCGAATGATAAACATATTATCGAACAACATGTGAAATCCGTTCATTTGAATATTAAGGAGCAGTGCCATTTATGCGAGTACGCTGCAGGTAGCAAGCATAAACTCCAGAGGCATATCAACTCTGTTCATTTGAAAATTAAGGATCACAAATGCCACTTGTGTGAATATGCAGCGAGTGAGAAACGTAAACTTGATATACACATAAAAACCGTACATTTAAAAATCAAAGAATACAAATGTGAGCTGTGTGAGTACGTTGCAAGTAGAAAAGACACCCTTCAGAATCACATCAAGAATATTCATTCGAGAACAGAGAATCTCGAGTGCTCAATGTGCATCTAG
- Protein Sequence
- MGDFSLNIEGRIGVDDVKLEEKLGVIDVSEQFIDEKGVHEREEYVFKKEESSSNNPVTEDDAFSFEDHREDSINSDHLDIEDHSCEYASRAKCELDAQSKSVDLKIKYHKCDLCDFFSRRKGNLQSHINSIHLKIKNHKCHMCDYAASVKHKLDTHVKSVHLKIKDQKCHLCDFATFQKSSLQAHIKSIHLKLRNYKCHVCEYAANNKRTLDVHLKSVHLDIKDHKCHLCDYATSRKSKLQRHIKSIHLKIKNHKCHMCEYAASEKQKLDSHVKTVHLKIKDHKCHLCDYATNEKHTLRVHINSVHLKIKDHKCHMCEYAASTKYSLQMHVKSVHLNIKPHKCKFCNYATSTKEYLNSHVNFVHLNIKQFNKCNLCDYAAHHKVVLDQHIKTVHLKIKDRKCHLCDYAASTKSRLEIHVNSVHLNIKKHKCDLCDYAANNKHIIEQHVKSVHLNIKEQCHLCEYAAGSKHKLQRHINSVHLKIKDHKCHLCEYAASEKRKLDIHIKTVHLKIKEYKCELCPNFGLPVYDRRNISIPVILKDLENCVQSLDLVDEDKNLLRAKNINIITNFCVKLEEKLGVIDVSEQFIDEKGVHEREEYVFKTEESCSNNPVTEDDAFSFEDHREDSINSDHLDIEDHSCEYASREKCELDAQLKSVDLKIKYHKCDLCDFFSRRKGNLQSHINSIHLKIKNHKCHMCDYAASVKRKLDTHVKSVHLKIKDQKCHLCDFATFRKSTLQAHIKSIHLKLRNYKCHMCEYAASDKRTLDVHLKSVHLDIKDQKCHLCDFVTSRKSKLQRHIKSIHLKIKNHKCHLCEYAASEKQKLDLHVKTVHMKIKDHKCHLCDYATNEKHKIQDHINSFHLNIKDHKCEMCEYASSEKRKLDAHVKSIHLKIKNHKCDLCDFATTGKGTLRVHINSVHLKIKDHKCHMCDYAASTKYSLQMHVKTVHLNIKDHKCNFCDYATSTKEYLNNHVNFVHLNIKKFKCDLCDYAANLKVVLDQHVKTVHLKIKDRKCHLCDYAASTKSRLEIHVNSVHLNIKKHKCDLCDYAANDKHIIEQHVKSVHLNIKEQCHLCEYAAGSKHKLQRHINSVHLKIKDHKCHLCEYAASEKRKLDIHIKTVHLKIKEYKCELCEYVASRKDTLQNHIKNIHSRTENLECSMCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -