Csep033344.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coccinella septempunctata
Gene Symbol
-
Assembly
GCA_907165205.1
Location
OU015576.1:2347641-2357580[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.6e-06 0.00028 22.4 1.5 1 23 164 186 164 186 0.98
2 14 5e-08 8.5e-06 27.1 0.7 1 23 253 275 253 275 0.99
3 14 1.4e-07 2.4e-05 25.7 2.5 2 23 282 303 281 303 0.97
4 14 7.7e-05 0.013 17.1 4.5 2 23 315 337 314 337 0.96
5 14 3.6e-05 0.006 18.2 5.6 1 23 400 422 400 422 0.97
6 14 0.0011 0.19 13.5 1.5 1 23 428 451 428 451 0.93
7 14 4.9e-06 0.00082 20.9 2.5 1 23 456 478 456 478 0.98
8 14 8.9e-07 0.00015 23.2 1.9 2 23 487 508 486 508 0.97
9 14 4.2e-08 7e-06 27.4 1.4 1 23 515 537 515 537 0.97
10 14 1.9e-05 0.0032 19.0 1.6 3 23 549 569 547 569 0.92
11 14 0.00018 0.031 15.9 4.2 1 23 575 597 575 597 0.99
12 14 7.9e-06 0.0013 20.2 1.8 1 23 603 625 603 625 0.96
13 14 7.2e-08 1.2e-05 26.7 0.2 1 23 631 653 631 653 0.99
14 14 0.00086 0.15 13.8 0.1 3 23 661 683 659 683 0.91

Sequence Information

Coding Sequence
ATGAGTGAAAATTCAGGACAAGTCGATCTAAATAATATTTGTCGTTCATGTATGGGAACAAATGAAAATATGCAAAATGTTTTCGAGGATAAAGAATATTTCAAGGATAACAAACTGCAATTAGCTGAAATGCTAATGGCTTGTACCTCAGTTCAAGTTACCAATGAAGATGGACTGCCTAATTTAATGTGTTCATCCTGTGAGAATAAACTGATTACAGCTTATGATTTCAAGCAACTGAGTGAGAAGTCTGATTTGTTATTACGAGAATTGTTAAAATCATTGCCTGAAGAAAACAATGTCAAGGAGGAGAGAATAATAATACAACCTGAACTGGGTAATGAGCCTTCAAATGAAAATGAGGATGATGATTATGATAATGATTTTGACAACGATGTAAATACTGCTCTAGAAGTAGACGATCGAGATTATTCAGATAGTGATTTTGAAGATCCTGAATCTAAAAAGGCAAAGAAGCCTAAGCATAAATATATATGTACTCAGTGTGATAAAGTTTTTCGTTCTAAGAAAGGTTTGAAAATTCATGAAAGGAAACATGGAGATAATGCAAAGGTTCTCAAAAAAGAGAATAAGGAAATTAGAAAAACAAGGTCTTCTAAGGATTCTTCAGAAGATATCAAGGAAGAAATCAAAATTGAAGAAATGGAAATTGATGCGATGTTGAAGGAAAAAACTAGCGAAGATGAACAAGAAATTCCTTTGGAAGTTGAAATTACTCAGGAGAGCAGAGTAGAATATGAATGTAATATTTGCTCTAAAAAATTCAGCTCTCCAACAGGCTTAAAAATCCATATGCGAACACATACTGCTGACAGTGTGTTACCATGTGAGGTATGTAATAAGACTTTTTCTAAAGCAAGTCATTTGAAACGTCATCAACAAACTCATGGAATAGTAGAAACAAAGGAAAAGAAGCTACTTCAGTGTGAATTCTGCGATAGAACTTTCAAATATCGTAAGAGTTTCAATCATCATATGCAGTCTGAACATGGAATAGATGGCGATGATAGTGATGTTTGTTTATCAACTATTGCAGAGAAAGTTAAGAAAGAAAATGAAGATAAGGGAAATCCTAGTAGTGCAGAAAATGATGGGGATTGTGATGAAATCATCACATTGGAAAAAGACGAAGAAGGTGTTGTACCAGCTTCTGAGAAAAAACGCCCCCCCAAAGTCCATACGTGTCACGTTTGTCAGACTGAGTTCAGCAGGGCCAACCACCTGACCCGTCACATGATCCTGCATCGCGCTGTTCTCGTACACAAGTGCACACAGTGCGACAACGCTTACGCGACCGAGGAGCATCTGAAGAAACACGTTGAAGAGGGACACGTTAATAAGCCATACGCTTGCACGATGTGCAACAAGCAATTCAGCAGGGGAGAGCACTTGATAAGGCATTTAAAGACGCATCAGAACACCAGCGAGGAGGATTTGAAGTGTGCCATCTGCGAGAAAACGTTTACAAGGTCTGATCATCTGGCCAGACACACCAAGGTTCATCTTCTGCAAGATAAGAGGCATGTGTGCTCCGATTGCGGGAAGGCTTTCAACAGACTGGATAACTTGAAAACCCATCAGAGAATACACACGGGAATCAAAGATCCATCAAAACTTCACTTGTGTATTTATTGCGGAAAAGAATTCAATAACTCGAGTAATATGATCGTCCACATGAGGAGGCACACCGGAGAACGTCCCTACAAATGTGGCCAGTGCGGCAAAGGTTTTCCGAGATCTCATGACCTGAAATGCCACGAACGTACACACTCAGGCGAAAAACCGTATCTTTGTACGTTGTGCGGAAAATCCTTCAACAAGAGCAACAAATTGCTGAGACACACTCGAGTACACACGGGAGAGAGGCCCTACGTCTGCAGTATCTGCGGACGAGCGTTTACCCAATCCAACGATCTAGCCTTGCACATGAGGAGACACACCGGCGCCCGACCCTACGGTTGCGGCATGTGCCCCGCCCGATTCATCCAGTCGGGACAGCTGAAGGCGCACAGGAGGTCGACCGGGCATTGGGTAGAAACGCCGCCCGATCTGAAGGGGGGCCACAGGGTGGAACCGGTTACTCCGCTGTTGGATCCCATTCCCGTCAGGTTCCGGACGAAGCCCAAGATGGAGGACGAGAAACCTCCACCGCAGATGATAAATCACATCCAGCCTGTTCCCCAACAAGAGATGATGAACAATTACCAGATGGTGTCGGTGGTACCGTGTCCTCCGAAGCTGATAGGGCTCGGATTGTCGCCGGAGACAATAGCAGCAATGGCGCCGCGACCTGACGCAGCGGACCACAATAATTTACCGGCCGATATGAAACTCAAAATGGAGAACACGGAAAAGGAGAACCAAACAATGGCGGAAACTTCGTTCCACCATGACGCGTTCGCGTTGCAGAAAGGTTACTTTCCGAATTACATGTAG
Protein Sequence
MSENSGQVDLNNICRSCMGTNENMQNVFEDKEYFKDNKLQLAEMLMACTSVQVTNEDGLPNLMCSSCENKLITAYDFKQLSEKSDLLLRELLKSLPEENNVKEERIIIQPELGNEPSNENEDDDYDNDFDNDVNTALEVDDRDYSDSDFEDPESKKAKKPKHKYICTQCDKVFRSKKGLKIHERKHGDNAKVLKKENKEIRKTRSSKDSSEDIKEEIKIEEMEIDAMLKEKTSEDEQEIPLEVEITQESRVEYECNICSKKFSSPTGLKIHMRTHTADSVLPCEVCNKTFSKASHLKRHQQTHGIVETKEKKLLQCEFCDRTFKYRKSFNHHMQSEHGIDGDDSDVCLSTIAEKVKKENEDKGNPSSAENDGDCDEIITLEKDEEGVVPASEKKRPPKVHTCHVCQTEFSRANHLTRHMILHRAVLVHKCTQCDNAYATEEHLKKHVEEGHVNKPYACTMCNKQFSRGEHLIRHLKTHQNTSEEDLKCAICEKTFTRSDHLARHTKVHLLQDKRHVCSDCGKAFNRLDNLKTHQRIHTGIKDPSKLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCGQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSICGRAFTQSNDLALHMRRHTGARPYGCGMCPARFIQSGQLKAHRRSTGHWVETPPDLKGGHRVEPVTPLLDPIPVRFRTKPKMEDEKPPPQMINHIQPVPQQEMMNNYQMVSVVPCPPKLIGLGLSPETIAAMAPRPDAADHNNLPADMKLKMENTEKENQTMAETSFHHDAFALQKGYFPNYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00764914;
90% Identity
-
80% Identity
-