Csep003514.1
Basic Information
- Insect
- Coccinella septempunctata
- Gene Symbol
- -
- Assembly
- GCA_907165205.1
- Location
- OU015573.1:41874283-41878538[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-05 0.035 15.0 0.1 2 26 19 42 18 50 0.94 2 2 0.0002 0.16 12.9 0.0 21 35 103 117 95 126 0.88
Sequence Information
- Coding Sequence
- ATGCCGTGTAAATATAAATATAAACAAAGAAAAACCATTCAAGGCGGATGGTCCAAAGAATCAATGGTTAGTGCTATTGATGCTATTAAAAATGGAATGGCAATTAAAAGAGCGAGTAGGGAGTTTTCAGAGTCGCTGTCATTGAAACGAAGGACTAAAGAAATTAAGAAAATAGCTCGTGGTGCAGTGAAATATCTGGGAGTGAGAAAAACTGTTTTCATTAATGAACAAGAAACCGAGGTCGTGCGCCAAATGAAGGACATGGAGCTTAGAATGTATGGATCAATAAGAAGAGAAATTTCGCTGAAAGCTACCAAACTCTACAATGTACCCCGAACAACTTTGAGACGTTTGGCATCTAAAGAAGATCTATCAGCCGAGAAAGCGACTTTTGTGAAATTGGGAAGAAAACCCACATTAAAATGGCCTGGACCCAAGCCTGGGCCATATTGA
- Protein Sequence
- MPCKYKYKQRKTIQGGWSKESMVSAIDAIKNGMAIKRASREFSESLSLKRRTKEIKKIARGAVKYLGVRKTVFINEQETEVVRQMKDMELRMYGSIRREISLKATKLYNVPRTTLRRLASKEDLSAEKATFVKLGRKPTLKWPGPKPGPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -