Cfuc003981.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- -
- Assembly
- GCA_001014335.1
- Location
- JXOR01000436.1:718519-748109[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.23 19 5.4 0.8 3 23 335 357 333 357 0.91 2 14 0.93 77 3.5 1.0 1 22 485 506 485 509 0.90 3 14 0.024 2 8.5 0.9 2 20 565 583 564 583 0.97 4 14 0.0038 0.31 11.0 0.8 1 23 603 626 603 626 0.92 5 14 0.0021 0.17 11.8 0.5 1 23 631 655 631 655 0.94 6 14 0.0026 0.22 11.5 0.3 2 23 671 693 670 693 0.94 7 14 0.0001 0.0087 15.9 0.2 1 21 698 718 698 719 0.96 8 14 0.0013 0.11 12.5 3.2 2 23 875 895 874 895 0.83 9 14 1.5e-06 0.00012 21.7 1.8 1 23 901 924 901 924 0.98 10 14 0.0037 0.31 11.0 6.9 1 23 947 969 947 969 0.98 11 14 0.075 6.2 6.9 0.2 1 23 978 1002 978 1002 0.96 12 14 0.0092 0.76 9.8 3.5 1 23 1008 1032 1008 1032 0.96 13 14 0.0004 0.033 14.1 5.1 1 23 1043 1065 1043 1065 0.98 14 14 4.8e-05 0.004 17.0 2.3 1 20 1071 1090 1071 1092 0.96
Sequence Information
- Coding Sequence
- ATGCTGGAAGATGATTTGTTTGATACGCATCtttgtattaaatgtaatacagCGATTGAgggattaaataattatatcaatCATCGTAAGACCGGATGTACAAcgaaaacaaatttaataaatcgtGGTGTTGTACAGGTGGATCATTCATATGGtgcatttgattttaatgtgccAAATACAATTACAAAAGAAGATGAAGTtgataaaagttttccatttaattatgatattgaTACACATCATCAAGATATACAAACAGAAGATACTGATACCGTACAACGACAAACAGATAAACAAACTTCAAATAATTATGCTTATAATTATGGATTAGGAGCCGATgtatttttttcatcattagAATTACGTAGTAGTTCAAAGAAACCAGAAAATTCAGTTGTTGGCAAACAATCAAATCGTATACTAACACGTAAAGCAACAGCTGCAATATTAGCCCACCATGATCAAGATGATGTATGGATTAATTCACAAGGTGCCTCGGGATCTGATCAATTAATGAAAGCAGTCAATGATATTAGTGGAACGAAAAAAGATGAatcgatatttaaatttaattttcaaaatgaatcaCCAGATCCAAGTGATTCAGAAGTAGAGGATGACGATGACGACGATGATGCTGAAGATGTTGACGATAGCAATGATGATGGCggtgataatgatgatgatgattatgatttaattaatataccGCCACAAACGGGTGGTAAATGGAAACCAGAGCAACGTCCATCACATCGTATTAATATACTCCATACGACCAGTCATTGGGATGATGAACGTGAAAATTGGGAAATGCAAGATGATACCCATgagattttaaatgataaattagaTAAAACGATTGACCAAGACGATGATGATCCAGAACATCCACCGCCAACACATACACGTGGTAAATGGGTACCGGGTacaaaaatagttaaattggACTATAAACCAGAACCAGAACcgattaaaatgatttcaaatgaatattggtGTAATTCATGTAATCGTCGATTAGCATCAAAAACGGTATTCGAAAGACATTTAAAATCGAATATTCATCGTAAGAAATCACAGCCAGAAGCTGAACTAGAAGAGGCATCCAATTCAAAGTATCGTAATCGCCAACTGTCTGACATGCAATTGAATGTACAAATGCCAACAGTGAAAtcaacaaataagaaaaaattaaagtcCAATACATCgaaaaatggtaataaaacGGATGGTAAAGCAACTGCCGCCAAATCAGGcaagttaataaaaaaacggAAACGTAGGCGTCAGTTTATTAAGTGTGAATTATGTAAAACTCGATTACCAAACAATTTGTTTGGCAAACACTTAATCTCTCATTACCACTGGCGACGTATGTTCATAAATCCCGAATTAGCGTTTCGCCaaatattagaaaatatgGACCAGATAATACATCATTCACCATTTCAATGTCAATCatgtaaattttatgcaaacaCTGAGGATCAATTTATGCGCCATTGGCTATCGAATGAACATAAAACGGCAACAAATTTTCCCGGACGGTACCTATGCCAATTTTGTAATCATATTGAGAATACAATTGATGGTATGAAGGAACACCTGTGTCATAACGACCATCAGGATATTGTGAAAACAATTAATCGTTCGGTACCAATAGTAATTACAAAACTGAGGGATATAAAATGTTAcaaatgtaatcaattgtttcgatataacattgaattgatgcATCATATGCCCGAATGTGATGGTATTGGACgtccaattgaaattgaactgaatcaatttaatctaTTCAAATGCCAATACTGTAACGTGACGTTACGCTCCCGTTTAGCATTACAAAgacatgaaattttaaaacatcgtaaatggaattattattgtgccatttgtaaattatcatttaaaacagCAATCGATGCTAAATTACATCGACGCACTATAAAACATAAGGTGGCATCAGCACATCGTAATAATCGACAGAATcttaaaaagaaatgtaaaatttgtaatgaaacTCTTAGCGATATAATCGAGTTAAAGAAGCATCTTGAATTAGAACATCCAAATATAAAGCATCGTTGTCCAATGTGCGGTTTAGAGTTTACATTATCACAAGAGTTAAGTCGACACATACGCGATAAAATAtgtacaacattaaataaagtaaatgattCAACGATATGTTTAACCATTGAAAAACCAGATATTGAACAATCATTGGATACCGattattcattacaattacCGGTGACTAGTTCAACGATAACAACAGTCAAGGTACTTGTGGGTGCCAATAATAATGATGTGGATGATGATCAACGAGACGATATTATTGGCGAAATTGATTCAACAATTATAAAGAATTGCGTGTATCCATCGAATAATACTAATAGAGATGAAGCTGATAATGTTGTTAAAACGGCGACAGCAGGTGGTACAGACACTGGATTGATATTAACTAAAcctgatgatgaagatgatgatgatgagaatgaagaaaaaacatgGGGATGCGAGTTATGCTCATACAGTACAAAGTCACAAgctgaaaatattttccatggAGTATTGCATATGAATGAGCAATcgattgataataaaatgaaatgtccTTGGTGTGATAAATCATTCAGAAAATCATCACTTTTATGCCATCTAAGGAATCATACCAATGAACGAATCTTTCAGTGTACAGAATGCTCAATGTCTTACActagaaaatcaaatttaaaagatCACGTAAAACGGATACATTCGGGTACAACAAATTCTAATAAGAAAtcaagaaatcaattaatgaagTCATCAACGAATCAAACGTACCAGTGCACGTATTGCAGCAAGACATTCTCAAAGAAACACATCTTGGAACAACATTATCATGTGCATCGTAACCAATTGGTGACAAAACGATTTCGTTGCGcatttgaaaattgttcatattCAGGACGTTTTGCTGCTGAATTGCGTGATCACTTGTTGACTCATTCCgatgaaaagaattttcattgtaccTTTGATGGGTGTCAATACACgggaaaaacattaaataaattgaaacgGCATATGAAAATCCATACGGAGCCGGAAAATACGGTTGAAAAGATTCATAAATGTACAGAATGTTCGTTTGCTACATCGGTATCGAGCCATTTGAAGAGACATGTGAAGACTCATACGAGAGAGAAACCGTTTAAATGTCCACACTGTGATTATAATTGTACAACAATGGATAATCTAAGGAAGCATATTGTCAACACTAAGAAACATCCAGGCCGTTATATACATGAATGCacgttttgtttaaatgaaaaacagaattatgGTACGAATTTTGAAAAGGATTACAAGAATCATCTATTACATGTTCACagtatcattgattttaaggGTGATATCTTTTAA
- Protein Sequence
- MLEDDLFDTHLCIKCNTAIEGLNNYINHRKTGCTTKTNLINRGVVQVDHSYGAFDFNVPNTITKEDEVDKSFPFNYDIDTHHQDIQTEDTDTVQRQTDKQTSNNYAYNYGLGADVFFSSLELRSSSKKPENSVVGKQSNRILTRKATAAILAHHDQDDVWINSQGASGSDQLMKAVNDISGTKKDESIFKFNFQNESPDPSDSEVEDDDDDDDAEDVDDSNDDGGDNDDDDYDLINIPPQTGGKWKPEQRPSHRINILHTTSHWDDERENWEMQDDTHEILNDKLDKTIDQDDDDPEHPPPTHTRGKWVPGTKIVKLDYKPEPEPIKMISNEYWCNSCNRRLASKTVFERHLKSNIHRKKSQPEAELEEASNSKYRNRQLSDMQLNVQMPTVKSTNKKKLKSNTSKNGNKTDGKATAAKSGKLIKKRKRRRQFIKCELCKTRLPNNLFGKHLISHYHWRRMFINPELAFRQILENMDQIIHHSPFQCQSCKFYANTEDQFMRHWLSNEHKTATNFPGRYLCQFCNHIENTIDGMKEHLCHNDHQDIVKTINRSVPIVITKLRDIKCYKCNQLFRYNIELMHHMPECDGIGRPIEIELNQFNLFKCQYCNVTLRSRLALQRHEILKHRKWNYYCAICKLSFKTAIDAKLHRRTIKHKVASAHRNNRQNLKKKCKICNETLSDIIELKKHLELEHPNIKHRCPMCGLEFTLSQELSRHIRDKICTTLNKVNDSTICLTIEKPDIEQSLDTDYSLQLPVTSSTITTVKVLVGANNNDVDDDQRDDIIGEIDSTIIKNCVYPSNNTNRDEADNVVKTATAGGTDTGLILTKPDDEDDDDENEEKTWGCELCSYSTKSQAENIFHGVLHMNEQSIDNKMKCPWCDKSFRKSSLLCHLRNHTNERIFQCTECSMSYTRKSNLKDHVKRIHSGTTNSNKKSRNQLMKSSTNQTYQCTYCSKTFSKKHILEQHYHVHRNQLVTKRFRCAFENCSYSGRFAAELRDHLLTHSDEKNFHCTFDGCQYTGKTLNKLKRHMKIHTEPENTVEKIHKCTECSFATSVSSHLKRHVKTHTREKPFKCPHCDYNCTTMDNLRKHIVNTKKHPGRYIHECTFCLNEKQNYGTNFEKDYKNHLLHVHSIIDFKGDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -