Cfuc004065.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- RREB1
- Assembly
- GCA_001014335.1
- Location
- JXOR01000873.1:97984-104672[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0017 0.14 12.1 1.2 2 23 202 223 201 223 0.96 2 14 6.9e-05 0.0057 16.5 0.2 1 23 231 253 231 253 0.98 3 14 1.1e-06 9.5e-05 22.1 5.0 1 23 259 281 259 281 0.99 4 14 8.8 7.3e+02 0.4 0.3 10 23 370 384 361 384 0.88 5 14 0.098 8.1 6.5 3.4 2 22 390 410 390 410 0.94 6 14 0.004 0.33 10.9 0.1 1 23 624 646 624 646 0.97 7 14 5.8e-07 4.8e-05 23.0 0.9 1 23 656 678 656 678 0.99 8 14 0.00021 0.017 15.0 2.0 1 23 684 707 684 707 0.97 9 14 0.00056 0.046 13.6 5.3 1 23 994 1017 994 1017 0.97 10 14 2.9e-05 0.0024 17.6 0.3 2 23 1255 1276 1254 1276 0.97 11 14 0.033 2.8 8.0 5.1 1 23 1282 1305 1282 1305 0.97 12 14 0.4 33 4.6 2.5 1 23 1381 1404 1381 1404 0.95 13 14 0.0037 0.31 11.0 0.5 3 23 1449 1469 1447 1469 0.96 14 14 0.00086 0.071 13.0 5.9 1 23 1475 1497 1475 1497 0.98
Sequence Information
- Coding Sequence
- ATGCGAAGATTAACTCGTGCAAATTCATCCCttggtaatttaaaaatgatggatttaattgaaaaattgccAAATAATGATACCGCCACCCGATTAGATCAACATGTATTGGATAAATATGATACAACAACTAGTGCCATTAAAATGGAACGTAGAACCTCAACAAATTCTGATTCATCATTAGAACCAATGGATATCAGTGTTAAAACATCAACAACAGATCCAAATACAACATTTGGTAGTAAAACAACGGGTGAAACCGGTAGTCATATTGATTCAGAAAATTTTGAGACAGATGATAGTGATCATGAGATCCGTCGAAGACGTGACACTACCAATTCAACATCCGATTTAGAAAATGGTGTTGTCACTAGAAAACGTACCCGCTTTAGTTcaccaattaaaaataataataatcatagtATGGAAAAGAATGCAAATCAAACAACAGTAACAACTACAACCACCGATATTAATAAAACGGaactgaattcattgaaaacaaCATTAAAGATAAGTGGCCATCATTTAGACGGTATGAGAACAAACCAAATTAAATCGAATCCAGATTCTGAAAATGATAGTGATAATACGAAACATTGTGTTTGTCCAATATGCGATGTGGTATCAACAACCGTGCATGAATTCACAGAACACCTACGATCTCACAATAATTCGGATGATTCAAATTATAAGTGTCGGATATGCTCAAAGGTTTTGTCATCAGCATCATCGTTGGATCGTCATGTGTTAGTTCATACCGGTGAACGTCCGTTTACctgtaaatattgtaatgttACGTTTACAACAAATGGTAATATGCATCGTCATATGCGCACCCATAAACGTGATAATACACTAATTAATACGAATAGCGGAAGTAATTGTGGCGGTACCGAAAGCTATGAAAGCGATGGATCATCTGATTCAGGTGGTAGTTCACGGGTTGATATACGTCGTGCTGAAAAACGTAAAAGTTCTGCGGACACCGATGACAGTGTTGAACATAAACGAAGACTGAagacaattaataataataacatattaaatggattattagacaaagaagaaaaaatattttgttgtattgtGTGTGAGCGTAATGATTTTCCCACAATGACACATTTAACAAACCATTTAGATAAGGAGCATCAAGATGTACCAGCCAAATGTAAATATTGTGGTTCACAATATAAAAGCCATGCAGCATTGAATAGTCACAAGTGcacaatgaataataatcCACCAAATGTAGTACAAGGTTTTAAGGATCTTGTCGATATTGATTTTACATGTGATAAATTTCCAACATTCGCCAAGGCCAAATGTGAACAAACAATTCGTACATCGATTACAAACCAGAATTATGAATGCCCAAAGTGTTACTGTGCATTTCCATGTATTAAAACATTGGAAATACATTCCCGGGACTGTTCagcaacaaataataaattagataaTCTATTGGGTAAAACACGAAACCGTCAGTTAAGTGAAACATCCGAAGAAGATTTGAAACGTGATGAATTCTTTAACCATTTAGATTTAAAGAATCGTTCAACCACTGGCAATTCATTGAACACATCAAGTGCAAATGATTCATTATCTTCATCCCATAGTGTTGATCTCTCCcgatttgatattaataaattgggACAACATCGATATCCATATAATCACGATCAAAAAGATCTCGATCTTGCTGATATACCTACAATGTTAAAAATGGCATCGTATGGCAGTGTATTCCATAATATGATGACACCATACCCAGGTGATATTAGTAAAGATCTCAACAATCAATATCCCGAAGAAGAAGCACAAGACGCATTTACCGCTGAATTtcgtaaaatgaaattacgtGGTGAATTTCCATGCAAATTATGTACCGCAGTTTTCCCAAATTTGAGAGCATTAAAAGGCCACAATCGAATCCATGTTAGTGATGCTGGTCCATCCGGTCCGTATCGGTGTAACATGTGTCCGTATACCATTAATGATAAGTCAGCATTAACACGTCACATGAGAACACATAATGGTGATAGACCATACGAATGTGCTATTTGTAATTATGCATTCACTACTAAAGCAAACTGTGAACGACACCTTAGAAATCGTCATGCAATGTCTACTCGAGATGAAGTTAAGAATGCCATAATCTATCATCCATCGGAAGATGCAAATTGTGATGATCCAACCAAGAAAATGTCAATGCTCAACTCACCAGATTTCGATGATGATGAACAATTGCCAAAGGACCGCAGTACACCAATTTcacaattaaaagaaattttaatgccATCATCTGCTGAACGGTcaaaaattcaagtgaaaagTATTGATAAATTAACGGAACCAAATGGCAAtgatgatttgaataaaacaataccGTCTGCTGAATCAAAACCAATGGATTTAAGCATGGATGCTCTTGATCTCAGTCGAAAGAATAGTTTAGCTGAATCCGAAGATAATGATACTGAATCATTGCAAGAGAAATTACAGAAAAgtcaacaattattattttcacaaatgagtcaacaatttttaaatggtgGTTTACCATTAGATGCTCCATATATGCAATTAGCTCAACTTTATCGTATGATGTTACCGTCAACTGGCTTAGGAATTCCACCTATGATGATGCCAGGTGCATTTGATCTTAAAGACTTACAACGGGCGCAACTACCATTTGCCAGTATGTTTCCAATGTTTATGCCACCTACTTTAACGCCACCAAGCACTATGCCATCACAATTTGTGCCGACACCAAGTCGTGCTGAAACTCATACCCCGAATCAATCAACCCATTCATCACCACACAGTCATCATCAATCACCAACACAATTGCCACCAACACCACAAAGAATGAACGTATCAAATCCCAATCAGAGTCCTGGACCAGTAAAAATGGTAATCAAGAACGGAGTACTGATGCCGAAACAGAAACAAAGACGTTACCGTACTGAACGTCCATTTAGATGTGAACACTGTTCTGCCTGTTTCACCCTACGTTCGAATATGGAACGTCACATTAAGCAACAACATCCACAATATTGGGCCCAAAGACATCGAGGTGGCGGACATAATGTTATGCGTCGTGGCAGCGGTGGACCACTTTCAATGCCACCAAATATGATGCCAGCAATTCCAAATATGTCCGACCAAATGAAATATGCCATTTTAATGcaacatttgaattcaaacgAACAAAAATTTAACGATTCAAATGATATATCTGGACGTATGAGTCCACCACCATCTGATGATGAAGTTGAACcaattaaaactgaaacacCACATACTGGTCATGAAGTAGATGATGAACCACAATTAGTAATTGATGAAGACTCAAAACCAGAAGATCTATCTGGGAAACTTACTGAACgtgaattattcaaatcaaatgaatctgCTCAACGAGTTGCACAAAATATTCTACAAGAAGTACTGATTGGCCAAAAGAATTCAAAAAGTGAGAATCCACAACCAGAAATTAAACGTTTATTGATGAAAGATGAACACGCGACCAACAATGATCTTGTTTCCGTATCAAAATTGGTAGATAACGCAACAAACCATTCTGTTAATCTTGGCAACTACTTTAAAACCGACATTCCAGCCGGTGAGAGTGATGAAGAAGGTTTAGTTGCATCCGGCAGTGCCTCAGATCATTCTGGTGCTGAAGATCATAATCCAACAGTTGGAtcagaacaaaaaaagaagaaatctGCATATAGTTTGGCACCAAATCGTGTCTCTTGCACTTATTGTCCACGGACTTTTCCATGGTCAAGTTCTTTACGACGTCATATACTAACACATACTGgacaaaaaccatttaaatgttcCAAATGcccattattatttacaacGAAAAGTAACTGTGATCGTCATTTACAACGAAAACATGGTAATGTTGAAGATGCCATGTCACTTTACATTCCAATTGATGAAATGCCAGAACCACAAAAAACACCAGCACCGAAACAACCAGAAATACATTCAACTCCAACCACAACGACCAATAGCAGCAGCGGAAATAATAGTGGTGCCAAACTTCCACAAATACCAATTACAATTCCAACAATTCGACCTGAATTACAGACTGGTAATGTACCCAGTGCAGAACTTCCGTTCAAGTGTCACTTGTGTGATGGCTCATTTCCAGAAAGAGTTTTATGCTTAGAACATATTCGTTCCTATCATGCTCAAGATTATGAATTGTTAATGGAGAAGGGTGCCATTGAAGCTGGTCAAGATAATCATGGCCATACAGAAGATGAAGAGCGTCAAGAAGGACGTGGCAAATATCCAGACTATGCTAATCGTAAAGTCATTTGTGCATTCTGTGTACGACGCTTTTGGTCTACAGAAGATTTACGACGTCACATGAGAACACATTCTGGTGAACGGCCATTCGAATGCCAaatttgtaaaagaaaattcacattaaagcACAGTATGCTACGGCACCAAAAGAAGCATAcaaataacaatcaaatgatgaaTAGTGGCTCAGACGTATCCGATGATGAGCAATCATCAATGGCTGGCAGTATCATTGGcccattaaataataatgttgccAAAATTCATCAACGTATTCCTGATTTAATACATAaagatttatttcaatggagATCAAACAGTGAACAGAAGGAGAATATCAGTTTACCACGTAAAGAAACGGTACGATCTGATGTAAAAGAGCCAGAAGATGCATCAGATCTTATTGGAAATCTACTTGGTATAAGTGATCAAGgcattttaaataaagtgTTACTCTCATCACCTGATGAAGCTGCCAAATTATTGGGCGTCGAAAAGTAa
- Protein Sequence
- MRRLTRANSSLGNLKMMDLIEKLPNNDTATRLDQHVLDKYDTTTSAIKMERRTSTNSDSSLEPMDISVKTSTTDPNTTFGSKTTGETGSHIDSENFETDDSDHEIRRRRDTTNSTSDLENGVVTRKRTRFSSPIKNNNNHSMEKNANQTTVTTTTTDINKTELNSLKTTLKISGHHLDGMRTNQIKSNPDSENDSDNTKHCVCPICDVVSTTVHEFTEHLRSHNNSDDSNYKCRICSKVLSSASSLDRHVLVHTGERPFTCKYCNVTFTTNGNMHRHMRTHKRDNTLINTNSGSNCGGTESYESDGSSDSGGSSRVDIRRAEKRKSSADTDDSVEHKRRLKTINNNNILNGLLDKEEKIFCCIVCERNDFPTMTHLTNHLDKEHQDVPAKCKYCGSQYKSHAALNSHKCTMNNNPPNVVQGFKDLVDIDFTCDKFPTFAKAKCEQTIRTSITNQNYECPKCYCAFPCIKTLEIHSRDCSATNNKLDNLLGKTRNRQLSETSEEDLKRDEFFNHLDLKNRSTTGNSLNTSSANDSLSSSHSVDLSRFDINKLGQHRYPYNHDQKDLDLADIPTMLKMASYGSVFHNMMTPYPGDISKDLNNQYPEEEAQDAFTAEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHVSDAGPSGPYRCNMCPYTINDKSALTRHMRTHNGDRPYECAICNYAFTTKANCERHLRNRHAMSTRDEVKNAIIYHPSEDANCDDPTKKMSMLNSPDFDDDEQLPKDRSTPISQLKEILMPSSAERSKIQVKSIDKLTEPNGNDDLNKTIPSAESKPMDLSMDALDLSRKNSLAESEDNDTESLQEKLQKSQQLLFSQMSQQFLNGGLPLDAPYMQLAQLYRMMLPSTGLGIPPMMMPGAFDLKDLQRAQLPFASMFPMFMPPTLTPPSTMPSQFVPTPSRAETHTPNQSTHSSPHSHHQSPTQLPPTPQRMNVSNPNQSPGPVKMVIKNGVLMPKQKQRRYRTERPFRCEHCSACFTLRSNMERHIKQQHPQYWAQRHRGGGHNVMRRGSGGPLSMPPNMMPAIPNMSDQMKYAILMQHLNSNEQKFNDSNDISGRMSPPPSDDEVEPIKTETPHTGHEVDDEPQLVIDEDSKPEDLSGKLTERELFKSNESAQRVAQNILQEVLIGQKNSKSENPQPEIKRLLMKDEHATNNDLVSVSKLVDNATNHSVNLGNYFKTDIPAGESDEEGLVASGSASDHSGAEDHNPTVGSEQKKKKSAYSLAPNRVSCTYCPRTFPWSSSLRRHILTHTGQKPFKCSKCPLLFTTKSNCDRHLQRKHGNVEDAMSLYIPIDEMPEPQKTPAPKQPEIHSTPTTTTNSSSGNNSGAKLPQIPITIPTIRPELQTGNVPSAELPFKCHLCDGSFPERVLCLEHIRSYHAQDYELLMEKGAIEAGQDNHGHTEDEERQEGRGKYPDYANRKVICAFCVRRFWSTEDLRRHMRTHSGERPFECQICKRKFTLKHSMLRHQKKHTNNNQMMNSGSDVSDDEQSSMAGSIIGPLNNNVAKIHQRIPDLIHKDLFQWRSNSEQKENISLPRKETVRSDVKEPEDASDLIGNLLGISDQGILNKVLLSSPDEAAKLLGVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -