Cfuc011665.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- -
- Assembly
- GCA_001014335.1
- Location
- JXOR01000489.1:171623-173490[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00025 0.021 14.7 0.2 1 23 27 49 27 49 0.97 2 11 0.00014 0.012 15.5 6.5 1 23 55 77 55 77 0.97 3 11 0.00013 0.01 15.6 2.7 3 23 87 107 85 107 0.94 4 11 6.5e-06 0.00054 19.7 1.4 1 22 113 134 113 134 0.96 5 11 0.16 13 5.9 0.0 2 23 211 233 210 233 0.90 6 11 0.00012 0.0099 15.7 0.7 3 23 272 292 271 292 0.98 7 11 0.00035 0.029 14.3 0.5 1 23 300 323 300 323 0.97 8 11 3.5e-05 0.0029 17.4 0.5 1 21 337 357 337 358 0.94 9 11 0.00013 0.011 15.6 3.9 2 23 367 388 366 389 0.94 10 11 0.0025 0.2 11.6 1.8 1 23 422 444 422 444 0.94 11 11 0.015 1.2 9.1 0.2 5 22 453 470 452 470 0.93
Sequence Information
- Coding Sequence
- ATGGAACAATCTGAAGAAACTACCGATGCTGGACAACTTCTTTTTAGTCAGTTACCCGGAATATTATCTAATAATGTATATATATGTAAGTTGTGCCAATCACCATTTCCAACAAAAGATGAATTACAAGAACAcaaagaaattcataaaagagAACAATATCATCATTGCCATATTTGTGAGTCTGCTTTCGCAAAGAAGTATAACTTGAAGAGACACTTGTTAACTCATTCAGCGAAAGAAAATGGAAAGCATCTCTGTGAGATATGtaacaaatcatttaataacatGACTAGTTTAAAAGAGCACAAGAATTTACACGATGAAGTAAAGCCATTCGTTTGCGGTGGTTGCAGCAGAACATTTTCTGGCCATTcaaatttaagaaaacatCGTAGACGATTTCCGCTTAAGTGCGGATTAGCAATTTACAATGATACATCTGGTAACATAGAGAATCTCAATAGCAAAGAAACAATTGGTACTCAACCATTTTTATTAGCGGTCGAAAAAGAAGCTGGGGTTCCAatcacaaatgaaattaaaaattgggCTAACACTAAATTACAAGAGATaTTGAAAATCACGAATCTCTCGAagtattataaaaaatattctacCGAAGATCTTTATTGTGCAGATTGTAAAGAGGTATATCAGGCGAAAGGATGGTACTTGAGGCATTTAATAGACGTCCATGAACGAGATGACATTTTAAGGGAATACCAGTTGTTGTGTgttattaacaaaaacaaacaattcCTATCTAAAAAATCTCTTCAGGATAATGGTTCCGATTGGGTGCCACTATTGTGTTTCTATTGTAGTCGTGCGTTTGAAAAGAAAGCTCTATTGATAAAGCATATAAAAAACCAtggaattaacattgaaaataattttgaatgtaGTCAATGTATGATGATATTTGCAACTCCGTCAGATTTACATAAGCATGTTAAGATTGAACACAAACCCCAATGTAGAAAGAAGTATGAAGTTAAAACCAAATTTCAATGCTCTAAATGTGGCAAGGAATTCGTTCGATATAGGAAATTAATAACGCATGAGATGTCTGATTGCGGCACCATACCAGTGTTGAAATGTAATCATTGTGAAGCCGTGTATTCGAGACGTGAATCTTTAACGAGCCATATTTTCAAACATCATTTTGATCCTGAAAAACATGCAATTTGTGAGAAATGCGAAAGGCCGATGAAGAAAAAAGATAGTGAAAAGCATATAAGGCATTGTCGAAAGAAGATTTATGAATGTGAAtATTGTGAGAAGCAATTTAAACATTACAGTGCATCGGTGAGCCATTTATCGGTACACAGTGGTTTTCGGCCCTATGCTTGTGGATGTGGAAAACGGTTAACTAACTCCACAGGTTTAAGAGATCATATAAAACGGTCGCCGTTATGCAAGTCATATGCTTATAATGGTAATAAACAAGATATGTACGGTAATCCGATGAACGATAGAGAATTCGTGAAAATCTGTAGGGAAATTATGGCAAACAAAGAAATCGAGGAAAGTATGTAA
- Protein Sequence
- MEQSEETTDAGQLLFSQLPGILSNNVYICKLCQSPFPTKDELQEHKEIHKREQYHHCHICESAFAKKYNLKRHLLTHSAKENGKHLCEICNKSFNNMTSLKEHKNLHDEVKPFVCGGCSRTFSGHSNLRKHRRRFPLKCGLAIYNDTSGNIENLNSKETIGTQPFLLAVEKEAGVPITNEIKNWANTKLQEILKITNLSKYYKKYSTEDLYCADCKEVYQAKGWYLRHLIDVHERDDILREYQLLCVINKNKQFLSKKSLQDNGSDWVPLLCFYCSRAFEKKALLIKHIKNHGINIENNFECSQCMMIFATPSDLHKHVKIEHKPQCRKKYEVKTKFQCSKCGKEFVRYRKLITHEMSDCGTIPVLKCNHCEAVYSRRESLTSHIFKHHFDPEKHAICEKCERPMKKKDSEKHIRHCRKKIYECEYCEKQFKHYSASVSHLSVHSGFRPYACGCGKRLTNSTGLRDHIKRSPLCKSYAYNGNKQDMYGNPMNDREFVKICREIMANKEIEESM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -