Basic Information

Insect: Coboldia fuscipes
Gene Symbol: L
Assembly: GCA_001014335.1
Location: JXOR01000012.1:102910-112958[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.4e-05 0.0028 17.5 3.5 1 23 128 150 128 150 0.97

2 18 0.21 18 5.5 5.7 1 23 156 178 156 178 0.98

3 18 1.2e-07 9.6e-06 25.2 3.1 1 23 184 206 184 206 0.99

4 18 9.6e-06 0.0008 19.2 0.2 1 23 212 234 212 234 0.98

5 18 0.53 44 4.3 0.9 5 23 314 334 310 334 0.83

6 18 0.0024 0.2 11.6 0.2 2 23 357 379 356 379 0.96

7 18 0.018 1.5 8.9 0.4 1 23 477 499 477 499 0.95

8 18 0.035 2.9 8.0 1.6 2 23 508 529 507 529 0.95

9 18 4e-06 0.00033 20.4 0.7 1 23 537 560 537 560 0.93

10 18 0.018 1.5 8.9 0.3 1 23 565 588 565 588 0.98

11 18 0.00013 0.011 15.6 1.9 1 23 595 618 595 618 0.98

12 18 0.00012 0.0096 15.8 2.3 1 23 651 673 651 674 0.96

13 18 0.00012 0.01 15.7 0.3 2 23 842 864 841 864 0.96

14 18 0.014 1.2 9.2 0.1 1 23 870 892 870 892 0.97

15 18 0.88 73 3.5 1.8 2 23 900 921 900 921 0.93

16 18 0.0035 0.29 11.1 1.5 1 23 1003 1025 1003 1025 0.96

17 18 0.0029 0.24 11.3 0.0 1 23 1035 1057 1035 1057 0.97

18 18 0.026 2.1 8.4 0.5 1 23 1064 1086 1064 1086 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.4e-05	0.0028	17.5	3.5	1	23	128	150	128	150	0.97
2	18	0.21	18	5.5	5.7	1	23	156	178	156	178	0.98
3	18	1.2e-07	9.6e-06	25.2	3.1	1	23	184	206	184	206	0.99
4	18	9.6e-06	0.0008	19.2	0.2	1	23	212	234	212	234	0.98
5	18	0.53	44	4.3	0.9	5	23	314	334	310	334	0.83
6	18	0.0024	0.2	11.6	0.2	2	23	357	379	356	379	0.96
7	18	0.018	1.5	8.9	0.4	1	23	477	499	477	499	0.95
8	18	0.035	2.9	8.0	1.6	2	23	508	529	507	529	0.95
9	18	4e-06	0.00033	20.4	0.7	1	23	537	560	537	560	0.93
10	18	0.018	1.5	8.9	0.3	1	23	565	588	565	588	0.98
11	18	0.00013	0.011	15.6	1.9	1	23	595	618	595	618	0.98
12	18	0.00012	0.0096	15.8	2.3	1	23	651	673	651	674	0.96
13	18	0.00012	0.01	15.7	0.3	2	23	842	864	841	864	0.96
14	18	0.014	1.2	9.2	0.1	1	23	870	892	870	892	0.97
15	18	0.88	73	3.5	1.8	2	23	900	921	900	921	0.93
16	18	0.0035	0.29	11.1	1.5	1	23	1003	1025	1003	1025	0.96
17	18	0.0029	0.24	11.3	0.0	1	23	1035	1057	1035	1057	0.97
18	18	0.026	2.1	8.4	0.5	1	23	1064	1086	1064	1086	0.91

Sequence Information

Coding Sequence: ATGTCTATTAAGATGTTATATCGTGGACCAAGTTCACGTTTAGaaacattaattgaaaaaattcaacaaaccAAAGAAACAGGACAAGaAATGTATTCGTCACAAACATCATCGTGTCTATCACCAACTCAATCAGAGGATATATCCACACCCAGTTCATTACCAGTAGATCCAGAGTCTCAACAAATCTTAGATGGTGAAAATTCTGTGATGACTGAAAAAGACCAAGAGACTCATTTGGATgcaaaacgaagaaaattacATCGTGAATTTGATAATGTTGAACCATCggataaagtgaaattattagCCGACGCAAAACCAGGAAATGAAAAAGGACATCATCAATGGTCAGCCCATCAGCGTAATGGACAAGGCTCCTATCACTGTCAATTTTGCGATAAATCTTTTCCTCGTCTTGGTTATTTGAAGAAACATGAACAAaGCCATGCAGAACATATGCCGTTTAAATGTGAATACTGTGCTAGATTATTTAAGCATAAAAGATCAAGGGACCGCCATACAAAATTACATACTGGTGATCGACGATATCGATGTCCACATTGTGAGGCAGCATTCTCAAGAAGTGATCACCTAAAGATCCATATGAAGACCCATGACAATCAGAAACCGTTCCAGTGTACTGTATGTAATCGGGGATATAATACAGCCGCTGCATTAACTTCACACAtgcaaaatcataaaaaacaaGCGGCTATTCTTAGTAATACGATGGGTTTCAgTCCAAGAAGTACTGGATCAGGATCAAGTATTAGTAGTCTGCATAAACGTAAATATTCACCGCAtcgagaaaattatttgaatattggaCCAAATACAGGTGTTGCAACGCCACAAATGCCAAATTTGATGATTGGCAATGATTATTTGGCTAATTTTTGGCGTAATGGAATGTCGGCGAACATTTTAACATGCATTTACTGTAACAAAACGGAATTTTCAACACTGGAACAACTCCACAGTCATATTTTATCAGCACATGGAGCTGCTTTCAAGGAGACTCAGAAACCATTTCGACATCCAACATCTATGGATGGTAGTCAACTCTCTTGTGATTATTGTCCATTGAAATTTCCAACGATTGCAGCAATGTTCCATCATCTACGTATAGTTCACATGGATCGATTGAGCAGTCCAACGGCTTACATcgaacatttaaataaactttcaATGTATGGACGATTAAGTCCAAGTCAATTGTTCCATCAAGATTCATATTTCTCTGATAAACAAAGTCAACGTGACAGTATTTCACCGGTACGATCACCATCCAGTAATGCTGCAGGACAACCGATGAATTCACAAATGAATTCAGAACCAGCCGACCAAGACAGTCCAACTGATTTGAGTCAAAAATCATCCAAAACTTTTGATGAACAAAGAGAATCCAAAtctgttgaaaataaattcctttGCAGTCAGTGTAACGCTGCTCTTCCGGACTTTGAATCCTTTAGAAATCATCTGAAAACACATTTGAGTCAAGACCACAATACAATGATGTGTCATCAGTGTAATGTTGGTTTCCAAAATCAATTAGATTATGAGACACACATGTTCAACCACTATCTACTCCAGACGACTGAATATCTTTGCAATGGTTGTAATAAACGTTACACAAATAGTGATGAAttacaaaaacatttaatggaaaGTCACGTTATGCTGCTCTATAAATGTAGTTTATGTTCGGATATTTTTGATAAAGAAATTAGTttacaaattcatataaaatcatcccatttaaatgaattgaaattgtatcgGTGTACTGCGTGTCCGGAAACATTTAAAACGGAAAAAGAATTTCGGACGCACGTTAAAACGAAACACAGTTTTTCAACGAATATGATTCGTTGTATGTTTTGCCGGACAGTATGTAGTAATGAATTAGAtatgcaatttcatttggcAACACATGCGCAACGATACCGATGTCCATTGTGTCCAGAATCATTTCATGTTGAATTCTTATTGGATCGTCATATGCAAAcccatcataatttaaaagatCAACGGCGCCACTTAAAATCACCACATTTAGATGCTGGCGGATTacatgtaaataataataacagtattggtttcaataataataatcttttgGATTATCCACCCTATTTAATGGGAaagaatttaatgtataaGATGTATAATCCAATGAATTTGGAAGCAGctagtaataataatttgggTTTCTTATATGGATACTATGATGGATTAAGCAAATTGCAAAATAAGGAAACGGAATCATTacaaagaaaacataatagCAGTATTAATGAAGTCAGTGAATTGAGTTCAGTAGATGTAAAGGATTTGAGCAGTGAACGGGGAAAATCAACATTTGATtcacaatcaattgatattaatggtACTGAAACTCATTCATCGAAAACCCGGTTTTCATGTGGAATTTGTGAACGATCTGATTTTAGCAGTGATTTAGAAGCACAAAATCATAGAAAACTGGTTCATAATTTAAAGACAGGCGTCAGTTTGAGGTGCGCTTACTGTAATGGCAATTTTCGATCAAGAAATGAATTAGAGAATCATATGAAGGTGGCCCATAACACTGGAGGCAAACACAAATGTCTAATTTGTGATGAAATTTTCCCATCACCAGCAATACTAGCTGAACACAAATTGACACATTCAAAAGTTGGTTCAACTGGCAAATGTTTCCACTgtagtgaaaatttattggatattGCTTCTTTCCGGGCACACATGAAAACCCATGGAAACTCTGAGCTACCAAACCAATGTATTGCATGTCGTCAAACTTTGAACTCTGAATTTGAAGTCTTCCTTCATGCCAAaTACCACACCAAGTCAACGGATAACTTAGAGAATACTTGTGCCTTCTGTTTAGAGCCATTGGCAATTGATTCTGATTCAAAAGTATGTGAAAATTGCTACCGAAAACACAATTTACCACATAAAATACCCCAATTGTTTTTGGAACCAAAGAAAGAGTCGGATCACAAGTGTAACATGTGTAAGAAACGATATGATAGTGGAGCCAAATTGCAGGAACATTTAATCGAACATACGTTCAGGGGATGTGATGATAGAGGATATTCATGTTACGTATGTTCTGCTGTATTTACGGGTGCTGCAGGTTTACAATCGCACATCAGTGAACATGGACCAAATTCAAAACACTATGATTGTAATGTTTGTGAACTAAAGTTCTTTTTCCGCGCTGAATTAGAAAATCATGCATTTGATCATAATCCAGATATGAGCAGTGCATTTGAATCAGTTACACCGCCAGTGTATGATGCGAATAAAGACACTAAACCGATAAAAGTTGAAACGTTAACACATGAAGATGAAGAATATATTGAAGTAGAAAAACTCGGTGAAAAGGAATTAGATCATGAGACGGTTCCATCAGACGATGCCAAATCACCAGCAccttaa
Protein Sequence: MSIKMLYRGPSSRLETLIEKIQQTKETGQEMYSSQTSSCLSPTQSEDISTPSSLPVDPESQQILDGENSVMTEKDQETHLDAKRRKLHREFDNVEPSDKVKLLADAKPGNEKGHHQWSAHQRNGQGSYHCQFCDKSFPRLGYLKKHEQSHAEHMPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAAILSNTMGFSPRSTGSGSSISSLHKRKYSPHRENYLNIGPNTGVATPQMPNLMIGNDYLANFWRNGMSANILTCIYCNKTEFSTLEQLHSHILSAHGAAFKETQKPFRHPTSMDGSQLSCDYCPLKFPTIAAMFHHLRIVHMDRLSSPTAYIEHLNKLSMYGRLSPSQLFHQDSYFSDKQSQRDSISPVRSPSSNAAGQPMNSQMNSEPADQDSPTDLSQKSSKTFDEQRESKSVENKFLCSQCNAALPDFESFRNHLKTHLSQDHNTMMCHQCNVGFQNQLDYETHMFNHYLLQTTEYLCNGCNKRYTNSDELQKHLMESHVMLLYKCSLCSDIFDKEISLQIHIKSSHLNELKLYRCTACPETFKTEKEFRTHVKTKHSFSTNMIRCMFCRTVCSNELDMQFHLATHAQRYRCPLCPESFHVEFLLDRHMQTHHNLKDQRRHLKSPHLDAGGLHVNNNNSIGFNNNNLLDYPPYLMGKNLMYKMYNPMNLEAASNNNLGFLYGYYDGLSKLQNKETESLQRKHNSSINEVSELSSVDVKDLSSERGKSTFDSQSIDINGTETHSSKTRFSCGICERSDFSSDLEAQNHRKLVHNLKTGVSLRCAYCNGNFRSRNELENHMKVAHNTGGKHKCLICDEIFPSPAILAEHKLTHSKVGSTGKCFHCSENLLDIASFRAHMKTHGNSELPNQCIACRQTLNSEFEVFLHAKYHTKSTDNLENTCAFCLEPLAIDSDSKVCENCYRKHNLPHKIPQLFLEPKKESDHKCNMCKKRYDSGAKLQEHLIEHTFRGCDDRGYSCYVCSAVFTGAAGLQSHISEHGPNSKHYDCNVCELKFFFRAELENHAFDHNPDMSSAFESVTPPVYDANKDTKPIKVETLTHEDEEYIEVEKLGEKELDHETVPSDDAKSPAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -