Cfuc009933.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- -
- Assembly
- GCA_001014335.1
- Location
- JXOR01000754.1:10652-15635[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.4e-05 0.0061 16.4 0.8 1 23 156 178 156 178 0.97 2 14 2.9e-06 0.00024 20.8 1.9 1 23 184 206 184 206 0.98 3 14 1.1e-05 0.00088 19.0 0.1 1 23 291 313 291 313 0.97 4 14 0.011 0.94 9.5 1.5 2 23 320 342 319 342 0.96 5 14 1.6e-05 0.0014 18.4 1.7 1 23 371 394 371 394 0.97 6 14 0.0003 0.025 14.5 0.2 1 23 407 429 407 429 0.95 7 14 5.3 4.4e+02 1.1 3.0 5 23 469 487 466 487 0.88 8 14 6.9e-06 0.00057 19.6 3.2 3 23 495 515 494 515 0.97 9 14 0.08 6.6 6.8 1.7 3 23 522 542 521 542 0.98 10 14 5.7e-07 4.7e-05 23.0 0.5 1 23 550 572 550 572 0.98 11 14 0.0021 0.17 11.8 0.2 3 23 580 600 578 600 0.97 12 14 4.4e-05 0.0036 17.1 0.4 1 23 606 628 606 629 0.95 13 14 0.58 48 4.1 0.5 1 23 640 662 640 662 0.94 14 14 0.012 0.97 9.5 0.1 1 20 1027 1046 1027 1049 0.93
Sequence Information
- Coding Sequence
- atgaatagaatgaaaatggaaGTTGATGGATATACGATTCACACAGTGAATCCCGATGATCATTTGGAAGATATGGTCGGCGATGGACAAGAAGAAGGTGAAATTATCTACGAATATTTGGTCGATGATGAGATCATTCCGTCAAATTCAATCAACACAATATCGAATAGTCTTGATCAAGTGGCTGCCgagaatttgatttatatggCTCAGGATGGAAATGTTCAAGCAATGGGAGATTTGATTGAGGAGCAAGTCGATCAAGTAGATAATGCCGATTATAatgaacaacaattttttGAATGTGAAGTCACTGAAGAAGTGATAACTGATGATTGGGTCCAGCCCCAAGGCGAGGAACGGGTAGAGATATCCGTAGATCAGTTATGTTCAGGTCCTGATATGTCAAATGAAATGCTAGAAGATGTACCTTTGCCGTTGTCAGAACACGCCGCTACTAGACCCTATCCATGTGATTTTTGTGCTAGACGTTTTAGAAAGAaggtgaatttattaaatcatatggTTTCACATCAACATGATCGACCTCATACCTGTACCTATTGTGGAGCGCGTTATACGCGCAAGAATGATCtgataaatcatttaagaGTACATTCAGTTTCTccagaaaattcaaatgttcgATTCCAAGAACATGACGATATAACTGAATACGATGAACCATATGAAGGAGAGGCATCTCAGTCGGCTTCATCTTTCTCGTCTGGTCGAAAGGTTCCAACAAAATCAGTAAAACGTAAACCAAAGCCACTGATACAATACGTATCACCAGAAGAGGAGCAAATCAGTAAAATAGCTCAGGATATAGACATCAAAAGAGAATATGTAATAGATCCAAAGAAGCCGTTCATGTGCACTTATTGTGGAGTTGGATTTGCTCGAGAGAAAGCTTTAACAGCACACATTAAGctACATGTCGGTGATAATGTACTAGAATGTGAACACTGCACCGAAAtgtttctaaataaaaatgaattattggatCATCAACAGAAGTATCATCCAGAAGAAGATGTATCACACTCCGAATACGAACCAGATAAGGGAGATCAAAGTGAATATGATAATGATTCCAATTACGGTGATTTTTATTGTGCTGATTGTGGAATGTCATTCCATCGTGCAGAGCTACTTAAACGTCATACAATGAAAATGCACATGAACCATGCTACTATCGCAGGTGAATTGGATGGCCATTGTTGCAATGTGTGCGGTGAATCATTTGCAAATGCATTAGATCTGTTGGCTCATGCAGAAATTCATGCTCGACTTCAGCAATTTAAGTGTATATTATGTGGTGATTCGTTCCTTGATGAAACTATGATTAAGAGGCATATTTCAATCGTACATGGGGATGAATTAACCCCTAATACGTGTATATTATGCGGTCGTCATTGTCGTGATGGAAGATCATTGTTGAAACACTCATTGGAACATTCAAACGAAAAAACGAATCCTTGTTCAATGTGTGGTAAAACATTTCATAACAAGGCACGACTTAAACGTCATATGCAATCGCACCGCAACAAATCGGTTTTATGTGAAGTTTGCCATGTTGAATTTCCTGATGGTCGTTCATTGATGAATCATCGacattcacataataatatttcgggaaaaaattttccatgtaAAGAATGTGGAAAAACATTTGGATCAAGAAGTTCACAGCAAATTCATATGCGCATACATACAGGCGAACGGCCTTACGGTTGTAGATTTTGTTGGAAAGCATTTGCTGACGGCGGTACCTTACGCAAACATGAGAGAATTCATACGGgtGAAAAACCGTATGCGTGTCCGGTATGCTTAAAGGCATTCAATCAACGAGTTGTTCTTAGAGAACATATTAGATCTCATCACTCTAATGCAGATCCAAAACGTGGTAATATATACCATTGTGAAGTTTGTTCAGATATTATGAGCAACTCCAAAGATCTGATTCAGCATTTAATCAATCATAGTGATGCCAATACTGCCATGAAAAGACAACCACATactGGTCctcgaaaatataaaagaaggAGGAAATTAAAGCCCCATGAAATTGCCCGATTGAAAGGTAGCAATAAGGTTAGTGGCAGTGAGGATATCTACGATGAGGATGATAATGAATATAGTGCACCTGAGGAGCAGTCGCAATCACCAGATAGATCACCAGTGAAAGTAGCATCGAGAAGTGTAAGGGACCGAAAAATTGATCATGAGTATAATGCAGATCCAATATCATATAATAACACTGATCGTAATTTCAACgaatcattcaatgatttccTTCATCAAATGTCGAGTAGTACGGAAACGAAGTATACTAGTAAACCAGCACCAAATCGGAAAggtaaaaataccaaaaatacatCACAACAAATGAGTAGACCTAAAATGATTCATACACAAAAAACCAGAGTTCAAGTAGAtgatggaaaaagaaaaacaaaaactatgaTCACTAGACGAGACTTGAATCAGCCAGAAGAATCTGATATGGATTCAAAAAATTTCGATATTGATCTGGGACGAGATGAATATTTGGAACGAGGTAATGTGTTGCGTACATCCGAATCAGAAATGTTGGAGGAATTGTCAACGAaaacatttgataaatttaatccaGATGTTGTTAGTGACTTAGAAGAAATTTTGAGATCtccaattaaatcaaaagaaaaagaatcgCCTAGACTGTGGCGTGATTTTTCATTGAGTGATCACCAATACATGTTAATGCGTCAAGAGCATGAATTTATTTTGCCGGATGATATATTACCGCCACAATCACCTCAAGAATCTGTAAGTTATTTAACTGAAACGGATTCACCAAAACCGACACGTCGTAGTATGAGAGCCAGACCGAATGAAACTTGGCGGGAGCTAACATTGAACAAGCGGCAAAAATTGAGTACTCTCAAATCTGTAACTGAAATTCCTTCAACATCAACAAGTGCTCGTTCACGAGCAAATTCACGTATGGACTCCAGGTCGTCTCGTCTAAGTAGTACGGGttcaataaaacaagaatCTTCCACAAAACAACAAGTAAAGGGAGTAAAGCTATTCAAGTGTGATATGTGTTCCGCCACTTTTGGTGATCGTATACAGTTAATGGATCATGTCCCAGTGCATATTTAA
- Protein Sequence
- MNRMKMEVDGYTIHTVNPDDHLEDMVGDGQEEGEIIYEYLVDDEIIPSNSINTISNSLDQVAAENLIYMAQDGNVQAMGDLIEEQVDQVDNADYNEQQFFECEVTEEVITDDWVQPQGEERVEISVDQLCSGPDMSNEMLEDVPLPLSEHAATRPYPCDFCARRFRKKVNLLNHMVSHQHDRPHTCTYCGARYTRKNDLINHLRVHSVSPENSNVRFQEHDDITEYDEPYEGEASQSASSFSSGRKVPTKSVKRKPKPLIQYVSPEEEQISKIAQDIDIKREYVIDPKKPFMCTYCGVGFAREKALTAHIKLHVGDNVLECEHCTEMFLNKNELLDHQQKYHPEEDVSHSEYEPDKGDQSEYDNDSNYGDFYCADCGMSFHRAELLKRHTMKMHMNHATIAGELDGHCCNVCGESFANALDLLAHAEIHARLQQFKCILCGDSFLDETMIKRHISIVHGDELTPNTCILCGRHCRDGRSLLKHSLEHSNEKTNPCSMCGKTFHNKARLKRHMQSHRNKSVLCEVCHVEFPDGRSLMNHRHSHNNISGKNFPCKECGKTFGSRSSQQIHMRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACPVCLKAFNQRVVLREHIRSHHSNADPKRGNIYHCEVCSDIMSNSKDLIQHLINHSDANTAMKRQPHTGPRKYKRRRKLKPHEIARLKGSNKVSGSEDIYDEDDNEYSAPEEQSQSPDRSPVKVASRSVRDRKIDHEYNADPISYNNTDRNFNESFNDFLHQMSSSTETKYTSKPAPNRKGKNTKNTSQQMSRPKMIHTQKTRVQVDDGKRKTKTMITRRDLNQPEESDMDSKNFDIDLGRDEYLERGNVLRTSESEMLEELSTKTFDKFNPDVVSDLEEILRSPIKSKEKESPRLWRDFSLSDHQYMLMRQEHEFILPDDILPPQSPQESVSYLTETDSPKPTRRSMRARPNETWRELTLNKRQKLSTLKSVTEIPSTSTSARSRANSRMDSRSSRLSSTGSIKQESSTKQQVKGVKLFKCDMCSATFGDRIQLMDHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -