Basic Information

Insect: Coboldia fuscipes
Gene Symbol: -
Assembly: GCA_001014335.1
Location: JXOR01000496.1:752771-757261[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0074 0.61 10.1 2.2 1 23 734 757 734 757 0.96

2 13 0.00051 0.042 13.7 1.4 1 23 866 888 866 888 0.99

3 13 8.3e-06 0.00069 19.4 2.4 2 23 891 912 891 912 0.98

4 13 5.2e-07 4.3e-05 23.2 1.3 1 23 918 940 918 940 0.98

5 13 1.2e-05 0.00096 18.9 5.3 2 23 947 968 946 969 0.95

6 13 0.5 42 4.3 1.3 5 23 982 1000 981 1000 0.96

7 13 0.0025 0.21 11.6 2.8 3 23 1007 1028 1007 1028 0.97

8 13 0.00065 0.054 13.4 0.3 2 23 1041 1061 1040 1061 0.96

9 13 1.7e-06 0.00014 21.5 1.1 1 20 1067 1086 1067 1089 0.94

10 13 1.5e-05 0.0012 18.6 0.9 1 23 1097 1119 1097 1119 0.98

11 13 0.00039 0.032 14.1 5.2 1 23 1125 1147 1125 1147 0.97

12 13 2.4e-06 0.0002 21.1 2.4 1 23 1153 1175 1153 1175 0.99

13 13 0.00095 0.079 12.9 4.3 1 23 1181 1203 1181 1204 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0074	0.61	10.1	2.2	1	23	734	757	734	757	0.96
2	13	0.00051	0.042	13.7	1.4	1	23	866	888	866	888	0.99
3	13	8.3e-06	0.00069	19.4	2.4	2	23	891	912	891	912	0.98
4	13	5.2e-07	4.3e-05	23.2	1.3	1	23	918	940	918	940	0.98
5	13	1.2e-05	0.00096	18.9	5.3	2	23	947	968	946	969	0.95
6	13	0.5	42	4.3	1.3	5	23	982	1000	981	1000	0.96
7	13	0.0025	0.21	11.6	2.8	3	23	1007	1028	1007	1028	0.97
8	13	0.00065	0.054	13.4	0.3	2	23	1041	1061	1040	1061	0.96
9	13	1.7e-06	0.00014	21.5	1.1	1	20	1067	1086	1067	1089	0.94
10	13	1.5e-05	0.0012	18.6	0.9	1	23	1097	1119	1097	1119	0.98
11	13	0.00039	0.032	14.1	5.2	1	23	1125	1147	1125	1147	0.97
12	13	2.4e-06	0.0002	21.1	2.4	1	23	1153	1175	1153	1175	0.99
13	13	0.00095	0.079	12.9	4.3	1	23	1181	1203	1181	1204	0.96

Sequence Information

Coding Sequence: ATGAGTAATGTACAGTGCCCGGTGTGCACGTTATTTTTACTCCCTGGGATGTCAATGGAGGCTCACCTTGAAACACATCCCAAGGAACAAGTTATTAAAGCGTTGGTTAGCTGCATGGTGCCAAAGACTGAAATAGTCGAGCCTTCCACCACATTGGTCGATACGATTGGAGGATATCGGAACTCGATTGAAATTCAACCAACACAAATCTACATACCACAGATTCAATCTACACCGAAAGTATTTATTAATCGTGATACTAAATTTGCTGTAATTCAACAGACAACAATTGAATCGGGAAATGACAGTGTAATGCCAATAAGCCCAGCATATCGAATGAAACATATACTATTACCACCGCCACCTTCGTATGGCGTTGCCGTTTCTCAATTAGCATCGCAAAGTAAATATCGATCGACCGCAAACGCGAACTCAGAACTACGGGACACAACCAATCAAGAAACATTTTCAAGTGCTTCCGAAGAGAATTCTATTAGTCAAGATGATATTCACATTGTCAATAGTCCAATCGCTAAGGAAAGATCAAATTCATCAGAAGAAATTCATGTTAATCTAACtgaaactgaagaaaaaaatgatcAACTACGTTCGTCATCACCAGAACTACAAAATGTTAGATGTAATTCAGTTATACAGATGAATCCATTAAAACGTCAACAAATGTTAGGATCACCAGCTGAGAGTATCGAAAGCGATAatgcaaaattatttacaGATGAGGAATTAGATCAATCTAGTTCTGGACCATCTGTTCAGGTATTAAGCAATGTTAAATTTTCACCTAATCACGAATGGGATTTGACATTTACGAAGACATTGAAATCAACCATTGGAACGGAAATGGATTTGATAGACGCTTCAAGTAGTTCAAAGCGAGATATTAATTTggaagatgaaattaaatgccTTGAACACTTGGAacaaacattattaaaatcaatggagCAAATCGATGAAGAAAACGATTTAATGACATGTGATGAATCTAATAAGTCACCAGAACGTGTTAAGGATAACGAAGAAAAAGATAATACCGAAAGTGAATCTGAAGAGAATAAAGTAGATGCAATGAGTAACGAACCACTGCCGTCTACTTCGAGCGGAATATTTGCACAACCATCTACTTCAAGATGTGCagtaatgaattcatttaaaaaggaACCGAAAAAATTGGTGGTGAAATTTAAGAAACCATTTGTTGTGTCTCAAACAAATTCTTCGACTATAATTGAAGATaatggagaaaataaaaatgtagcACTAGAAAAAGTCAATAATGGTATTGAAACACCTAGTAACAATGTCAAAGATACAGTTAATAATCAATCCGGATCATCAGAGGCTAAATCACCTCCATTAAGTGACAATGTGCGAAcagataaattgatttcagaATCTCAGAATAGAAATTTTTCACATAATATTGACGATGATGACGATGACAAGAAAAAGATAACTGACGAAGCAATTGAACGAGTCCGTTTGGAATATAGTGTTTTCCTAGATCCTACTCCATCTACTTCGGGAATTTCTAATTTAGGTCACCAAACAACTGATGGTAATTCTTTGCGCGAATTGTTACTTCAAAACGAGCCAAGTACTTCCCAATCCCAACGATctgcaaataataatatgtgtTATTCAAGTGATATAAAACCTATGTTTGGTATTCCAAATTTCACTAGTTATCCAGATTTAAACGAACGGAATACACCTTTTGATTTCCTACAAGATAACTTCAATTGGAATCAGAGTAGTAATCAATTTGTGGGATTTGATAATGATCGTAATTCCTTCATTGATATAAACGTTTATAAACACAATGCAGATCAAAATGAGAGATCAAAGTCTGCAGACAGTCTAATGTTAAATTCAGacgaaaatattttactaAAAGGAGAACGGGAAACAAATGGTGATATTGATGTTTCCTGGCCGCAGGAAGTAACTGCTAGATACACTAATTCCTATGATACTACAATAGCAAGAGAAAGTTGGGGATTTAGTAACGATCAGCAAGCAATCGAAAGTAACAATCAATTAGATCAACTTTCCTCAATTTTCCCCAAATTCAATCGAATTGATTCAACGGATGATAGAGATACAAAAGCATTCATCGATGCTACTAATAATTCTTCGGTTGATACCCTCGAGAAGCGATTGattaaaatacgaaaatttcattgtatggAATGTCCCAAGGTATTCAACTCATTGCGAAAGAAGCGTCAACATCTTGCCACCGAGCATAATCATTTGTTACCAATCCAAAGAGCAAAGGCAACAAGTACTGCCGTTAGCTCAACATCTGTCTCCGATACTGTCGGTCCAAGTACATCAATAGTTAAGACTGAACCAGTTGGAGACTCTGAGCGTATTAATCATATTGTCCATTTGGAGAATGACACCAGCCTGTCATATGCTAAAATTAAAGATGAGTTAAAGCGGGATAATATCAgtattcatcaatttttaatgcaattgaatcTCAGTAAAATTCAGCAACGCAATGAGAACATCGATGACGGTTCTTTTCAAATTACGATATCCTCTCTGCCAGATAGTACACCGTTATATAAATGTGGAACATGTTCTGAATATTTTCGCAGCTTAAAAAGTTTCAACGTACATTTAAATGTACATCCAGCCCAGTGTTTTATGTGTCCAAAAACGTTCCGACACTGGGTGAATTTATCCGTGCACCTGAAACGACATTTGAATATACGTGATTATGAATGTCCCCATTGTGATAAAAAGTTTGTCTTGCGCCAGAATTTAACTGAACATATGAATATCCATTCCGGAGAATCGCCattgaaatgtaatatttgttttaaacgTTTCAAACGGTATTCTAATTTGATCCAGCATCGCAATCGACATCACTTGAAGATAAAACCAAGAGAAAAGGATTACATTTGTTATTGTGGTGAAGTATTTCACACAATGGCCAAATACTTTTGGCATAAGGAGACGCATGACCCAAAACCGAAGGGTTGTCCGTACTGTCGTGAACGTTTTATGCACCGCAACAGTTTATCACGACACGTTCGTCTATCCCACCCAGAAAAGTTTGCCTCGTTCAAAGGTGAAACTTTAAATTGCCCCATTTGCCAAAAACAATATGTGAAATCtagtttaaaaattcatatggcTCGTCATCAAGTAAAGACTCAATACGAATGTAGTATTTGTAACAAAAGCTTTACCACTAAATGGAATCTAAAGCAACATAAATGGATCCATGCAAGTCGATCATCGATGccttttaaatgtaatttgtgTTCAAAGGCTTTTGTACGTGAAAATGAGTTTACGTCTCATATGAATGCTCATAAATCAATCAAACCGTTTACATGTGACTTTTGTGGATGTAAGTTCACCAGAAAGTATACTTGGATTCGTCACACTAAAGAACATCAGACTCCAAAGCAATATAGATGTGATGAATGCGGAAAAGAATTTCATCGAGCTTATTACTTATCGGAACATCAACGTTCACATACTGGTGAGAGACCATTTGAGTGTGTAATTTGTGGAAAAACTTCAACAACCAAAACAAATCACAATAAGCACATCAAAATCCACCATGCAAGGGATTTGATAACGGCTGAGAGTTAA
Protein Sequence: MSNVQCPVCTLFLLPGMSMEAHLETHPKEQVIKALVSCMVPKTEIVEPSTTLVDTIGGYRNSIEIQPTQIYIPQIQSTPKVFINRDTKFAVIQQTTIESGNDSVMPISPAYRMKHILLPPPPSYGVAVSQLASQSKYRSTANANSELRDTTNQETFSSASEENSISQDDIHIVNSPIAKERSNSSEEIHVNLTETEEKNDQLRSSSPELQNVRCNSVIQMNPLKRQQMLGSPAESIESDNAKLFTDEELDQSSSGPSVQVLSNVKFSPNHEWDLTFTKTLKSTIGTEMDLIDASSSSKRDINLEDEIKCLEHLEQTLLKSMEQIDEENDLMTCDESNKSPERVKDNEEKDNTESESEENKVDAMSNEPLPSTSSGIFAQPSTSRCAVMNSFKKEPKKLVVKFKKPFVVSQTNSSTIIEDNGENKNVALEKVNNGIETPSNNVKDTVNNQSGSSEAKSPPLSDNVRTDKLISESQNRNFSHNIDDDDDDKKKITDEAIERVRLEYSVFLDPTPSTSGISNLGHQTTDGNSLRELLLQNEPSTSQSQRSANNNMCYSSDIKPMFGIPNFTSYPDLNERNTPFDFLQDNFNWNQSSNQFVGFDNDRNSFIDINVYKHNADQNERSKSADSLMLNSDENILLKGERETNGDIDVSWPQEVTARYTNSYDTTIARESWGFSNDQQAIESNNQLDQLSSIFPKFNRIDSTDDRDTKAFIDATNNSSVDTLEKRLIKIRKFHCMECPKVFNSLRKKRQHLATEHNHLLPIQRAKATSTAVSSTSVSDTVGPSTSIVKTEPVGDSERINHIVHLENDTSLSYAKIKDELKRDNISIHQFLMQLNLSKIQQRNENIDDGSFQITISSLPDSTPLYKCGTCSEYFRSLKSFNVHLNVHPAQCFMCPKTFRHWVNLSVHLKRHLNIRDYECPHCDKKFVLRQNLTEHMNIHSGESPLKCNICFKRFKRYSNLIQHRNRHHLKIKPREKDYICYCGEVFHTMAKYFWHKETHDPKPKGCPYCRERFMHRNSLSRHVRLSHPEKFASFKGETLNCPICQKQYVKSSLKIHMARHQVKTQYECSICNKSFTTKWNLKQHKWIHASRSSMPFKCNLCSKAFVRENEFTSHMNAHKSIKPFTCDFCGCKFTRKYTWIRHTKEHQTPKQYRCDECGKEFHRAYYLSEHQRSHTGERPFECVICGKTSTTKTNHNKHIKIHHARDLITAES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -