Cfuc003971.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- -
- Assembly
- GCA_001014335.1
- Location
- JXOR01000436.1:535259-537448[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00023 0.019 14.8 3.5 1 23 50 72 50 72 0.96 2 12 1.4e-06 0.00011 21.8 0.3 1 23 78 101 78 101 0.96 3 12 2.2e-05 0.0018 18.1 4.8 1 23 108 131 108 131 0.98 4 12 9.5e-05 0.0078 16.0 2.1 1 23 141 164 141 164 0.97 5 12 0.0049 0.41 10.6 0.6 1 22 298 319 298 323 0.93 6 12 0.0019 0.16 11.9 0.2 2 23 326 347 325 347 0.96 7 12 6e-05 0.0049 16.7 0.6 1 23 353 375 353 375 0.98 8 12 2.3e-05 0.0019 17.9 3.4 1 23 381 403 381 403 0.99 9 12 3.3e-06 0.00028 20.6 3.5 1 23 530 552 530 552 0.98 10 12 5.1e-06 0.00042 20.0 3.1 1 23 558 580 558 580 0.96 11 12 1.9e-06 0.00016 21.3 0.9 1 23 589 611 589 611 0.98 12 12 7.3e-05 0.006 16.4 2.0 1 23 617 640 617 640 0.96
Sequence Information
- Coding Sequence
- ATGGATCCTGATGAGAATCTGGCACTTGACTGTTTGGAGCCATTTGAGGTGAAACAGATAAAAACTacaaagaagagaaaaaagagGAAATTTTTGACAAACAAGAAACACTCAAGTGGGAAGAAGGCGAAACAGGTAATTGAGGACCACTTTTGTCCCGTATGTTTACATAATTTTGCCACCAAAAGCAGCTTAAATCGACACGAATTGACCCATCAGAATGTAAAGAAATATGTATGTGAAATATGCGGAGCCAAATTCAGCCAAAGTTATTCGCTCAAGATTCACTTAACCAAACTGCACACCACTGGTACCAAGCAATTCAAGTGCAAAGTTTGTAAAACCACATTTCAGAGGGAACACAATTATAAGAATCACATCAGATCAGCGCATCCGATCGAAGAAGATATTGTCAATAGTTTTAAATGCCCTGACTGTGATGTACCGTTTTGCACAATTCATGGCTTATCTTACCACATTAGAAATACACATTCTGGGAAATCAAAAAGAAAGCAAACAGTTGCCCCCACAGATGAAAATGTAGTTAACATAAATGTAATACAGTTTCTCAGTAATAATACCCAAAGTCCCATAAAAGATGTTACTTCGGATCCCAATTCGTCTgatgaatttctattgaaaaacTTTAATCTTACTAAAGTCATAGAGAAACAAATGGAACTGGATATTCAACCAAAGGACAAcaGTGATACAGTGATGAAGACAGAAAATTCTCAacatcaaaagaaaataaaagaccATCCCACACTACTCAAAgctaaacaaattattattaataatgatcaTACATACACCGCTACTCTTAAGATAGAGGCCGATGAAGCGAAAGGTTCGCAAAATATCCTATCCAGTGTCAATAAATCTTTGGAATTTTCATGTTCCTTGTGCGATAGTAAGTTTAGTACAGAAGAAGTATTACAAGAGCATCTTAAATCTAAAGATTCTCATTCCATCAAGTGCCAATACTGTCCAATggCCTTTCCTGACAAATCGATTCTCAAAATTCATTCTAAGAATCATAGcgataataagaaatattcttGTACATTGTGCACATCAACATTCCGGGCGGCTGCgaatttaagaaaacatttacGAGGGCACAGTTCCAAACGAGATTATCGTTGTCCGTACTGTgatgaaatgtataaaagtAAATGTGAGTATCGCATACATTtgatgaaacataaaagagaGATCTTAAAAATTGATCCAGACGAATTAATCGGTGAGGCTCAAGTGGTTGATATGGGTGAACGGATTGAAATCCCTGAAGAAATAGTCTCTGGCGATGATGCTGTTAATTTCGTTGACGTGGCAGACGACTTTGACTTTCCCATTGCCGGTGAAGAGTTGTGTCTAAACGAAAATATGTCTGAggatattgaatcaaataaaattgagccTTCGATTACACATGACATGTTAACTGCTGGCTGGACTGATTTGCCGGTACTGAGGGGTCACACAATAGAACCAGTCGAAACTAGTCCAGAAGATAACAAGAAAGGAAACCGGAAAAATTTGAAGATACAAAATGAATCACTTACAACTGATTCTTCTTCCTATAAGTGCAGAAAATGTACAAAAAGTTTCGCCAAAAGCCATGGTCTCGAGCGTCATATGATATCCCAttctaaagaaaaaccatttgaatgcCATGTTTGTGGTAAACCGTTTCCAACCAAATTCTCATTACATCGACATGTGTTCATCCACAACAACCCAAGCGAGAGAGTTAGATTTAACTGCACTATCTGCAAGAAATCATTTACTGCAAAACAAAGTTTAGAGCTTCATATAAGAATTCATACTGGTCAAAAACCATTCAGCTGTAAATACTGTCCAAAGAAATTCCGCACCTCAGGAACGAAAGCTgtacacataaaaaataagcatcccaaaattacaatttaa
- Protein Sequence
- MDPDENLALDCLEPFEVKQIKTTKKRKKRKFLTNKKHSSGKKAKQVIEDHFCPVCLHNFATKSSLNRHELTHQNVKKYVCEICGAKFSQSYSLKIHLTKLHTTGTKQFKCKVCKTTFQREHNYKNHIRSAHPIEEDIVNSFKCPDCDVPFCTIHGLSYHIRNTHSGKSKRKQTVAPTDENVVNINVIQFLSNNTQSPIKDVTSDPNSSDEFLLKNFNLTKVIEKQMELDIQPKDNSDTVMKTENSQHQKKIKDHPTLLKAKQIIINNDHTYTATLKIEADEAKGSQNILSSVNKSLEFSCSLCDSKFSTEEVLQEHLKSKDSHSIKCQYCPMAFPDKSILKIHSKNHSDNKKYSCTLCTSTFRAAANLRKHLRGHSSKRDYRCPYCDEMYKSKCEYRIHLMKHKREILKIDPDELIGEAQVVDMGERIEIPEEIVSGDDAVNFVDVADDFDFPIAGEELCLNENMSEDIESNKIEPSITHDMLTAGWTDLPVLRGHTIEPVETSPEDNKKGNRKNLKIQNESLTTDSSSYKCRKCTKSFAKSHGLERHMISHSKEKPFECHVCGKPFPTKFSLHRHVFIHNNPSERVRFNCTICKKSFTAKQSLELHIRIHTGQKPFSCKYCPKKFRTSGTKAVHIKNKHPKITI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -