Basic Information

Insect: Coboldia fuscipes
Gene Symbol: su(Hw)
Assembly: GCA_001014335.1
Location: JXOR01000354.1:241026-243150[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00011 0.0095 15.8 1.2 1 20 53 72 53 74 0.93

2 11 0.00034 0.028 14.3 0.2 3 20 132 149 130 150 0.94

3 11 0.025 2.1 8.4 0.4 1 23 159 181 159 181 0.97

4 11 2.2e-06 0.00018 21.2 0.9 1 21 187 207 187 208 0.94

5 11 5.1e-08 4.2e-06 26.3 0.5 2 23 221 242 220 242 0.97

6 11 5.8e-07 4.8e-05 23.0 0.1 1 23 252 274 252 274 0.99

7 11 1.4e-07 1.2e-05 24.9 0.8 1 23 280 302 280 302 0.99

8 11 8.2e-08 6.8e-06 25.7 0.9 1 23 308 330 308 330 0.99

9 11 0.0048 0.39 10.7 2.2 2 23 337 358 336 358 0.90

10 11 0.00031 0.025 14.4 2.5 1 23 364 387 364 387 0.97

11 11 9.7e-06 0.00081 19.1 0.6 2 23 393 414 393 414 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00011	0.0095	15.8	1.2	1	20	53	72	53	74	0.93
2	11	0.00034	0.028	14.3	0.2	3	20	132	149	130	150	0.94
3	11	0.025	2.1	8.4	0.4	1	23	159	181	159	181	0.97
4	11	2.2e-06	0.00018	21.2	0.9	1	21	187	207	187	208	0.94
5	11	5.1e-08	4.2e-06	26.3	0.5	2	23	221	242	220	242	0.97
6	11	5.8e-07	4.8e-05	23.0	0.1	1	23	252	274	252	274	0.99
7	11	1.4e-07	1.2e-05	24.9	0.8	1	23	280	302	280	302	0.99
8	11	8.2e-08	6.8e-06	25.7	0.9	1	23	308	330	308	330	0.99
9	11	0.0048	0.39	10.7	2.2	2	23	337	358	336	358	0.90
10	11	0.00031	0.025	14.4	2.5	1	23	364	387	364	387	0.97
11	11	9.7e-06	0.00081	19.1	0.6	2	23	393	414	393	414	0.97

Sequence Information

Coding Sequence: ATGGATACAGGAGAACAAATAGGGAACACTGAAGTGGAGTATGTGGTTTATGATGAGAGTTCGTCTGGCGGTAGCATTGAAAGCGATGGGGGCAACGAACTGATGCTGGAAGACGAGGACACGGAGAACGACGATGATCTGATCATTAAGCAGGAGCATGTTTGTGGTAAATGTAACAAGACCTATAAGTCATTTGGGtcACTGAAACGTCACTGGGCGAAATTCTGTGGCGGCACAACGGAATCGAAACCGAAGAAGCGAAAACCGACGATAGATCAAAATGTATTCAAGCAGACAAAACCTAAGATTGATAATCGCAAATTACCAATTGAATCGGGTAAATGCTACTGTTGCTTTGAAGCATTCAATTCCGCCCATAATGGGCATATAGCATGTCAATTTTGCCCAAAGGCATTCAAATCTGATGATAGTTTGAATCGTCACCTTTACTGCTTGCACTCTGCGTCTAACATGTTTCCATGTGAAACTTGCAATGCAACCTGTCCAAACAAAGAGATTCTCAATTTGCATCTAGAGAGTCATAAGAAGGGTAAACCATTTGCTTGCAATGTGTGTGGCAAAGACTTTACCCGAAAGTATCATTTGGATCGTCATCGAAATGCGACTACTTGTGGTGGAGATACTTCTCGTACAGGATCTACTTGTAATGTATGCGGCAAAGTATTTACGCGCATTGATAATTTACGTGAACACCTTCGGTCTCACGTGGGCCAATCAACCCGTAGACGGGATTATCCATGTCCATATTGTGATATGGCGTTCTTCGGTTCGTCTCTTTTGAATATCCATATAAGAACACACACAAAGGAAAGGccatttaaatgtgatttgtGTGAAAAATCATTTCCATCTAATGGAGCATTAAGGAAGCATCGTCGAATGCATACTGGAGAAAAACCATACAAGTGTAACGTATGCGATAAGAGGTTTGCAGCTAAAGAAACATTGAATCGTCATATGAAAGTGCACACTGGTGAGAAGCCTCATATCTGTATCTATTGTCAAAAAGGGTTTATTCAAGCAACACAATTGCAAGCTCATTTATTTCATCACACGGGTGAAAATGGCTTTACTTGTGACTTTTGTTCACGGGATTTTAGCAGACGGACCCGTTTGACAACTCATGTGCAAAAAATTCACGCTGATGTTATGCCAGAGTGTAaagaatgtaatgaaaaatttataactaaCAAAGATTACGAGGTTCATATGTCGACCCATAATACGGAAGAGAACTCGGaGGAATACGTGTATTTGAAAGGAAAAATCGCCTGTCTTCTTACAACATATTTAGAAGAAGAACAATTAAAAGCATATGGATGGCCTGAAATAGATGTTGAGGAAGttttagaaaaattaattaaagattGTGGGTCGGCGCCATCAAGTTTAACTGAAGGagataaaattacaaaactgCGAGATAATGTAAAACTACTCTTGATATTTGTAATTGGCACTGAAGTAATCAAGTCaatgttaaacaattattCCGTTGATGAAGTTATTGAAAAGTTGACGGATCCTAAGGTAGAAAATTAG
Protein Sequence: MDTGEQIGNTEVEYVVYDESSSGGSIESDGGNELMLEDEDTENDDDLIIKQEHVCGKCNKTYKSFGSLKRHWAKFCGGTTESKPKKRKPTIDQNVFKQTKPKIDNRKLPIESGKCYCCFEAFNSAHNGHIACQFCPKAFKSDDSLNRHLYCLHSASNMFPCETCNATCPNKEILNLHLESHKKGKPFACNVCGKDFTRKYHLDRHRNATTCGGDTSRTGSTCNVCGKVFTRIDNLREHLRSHVGQSTRRRDYPCPYCDMAFFGSSLLNIHIRTHTKERPFKCDLCEKSFPSNGALRKHRRMHTGEKPYKCNVCDKRFAAKETLNRHMKVHTGEKPHICIYCQKGFIQATQLQAHLFHHTGENGFTCDFCSRDFSRRTRLTTHVQKIHADVMPECKECNEKFITNKDYEVHMSTHNTEENSEEYVYLKGKIACLLTTYLEEEQLKAYGWPEIDVEEVLEKLIKDCGSAPSSLTEGDKITKLRDNVKLLLIFVIGTEVIKSMLNNYSVDEVIEKLTDPKVEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -