Basic Information

Insect: Coboldia fuscipes
Gene Symbol: -
Assembly: GCA_001014335.1
Location: JXOR01000141.1:157043-167308[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 5.1e-05 0.0042 16.9 0.2 3 23 114 134 113 134 0.97

2 15 1e-06 8.3e-05 22.3 1.2 1 23 140 162 140 162 0.99

3 15 9.7e-06 0.0008 19.2 2.8 1 23 168 190 168 190 0.98

4 15 0.00011 0.0093 15.8 3.6 1 23 196 218 196 218 0.98

5 15 6.6e-06 0.00055 19.7 2.2 1 23 228 250 228 250 0.99

6 15 1.5e-06 0.00012 21.7 1.3 1 23 256 278 256 278 0.98

7 15 1e-05 0.00087 19.0 0.1 1 23 285 307 285 307 0.99

8 15 8e-06 0.00067 19.4 1.1 1 23 313 335 313 335 0.97

9 15 3.3e-05 0.0027 17.5 0.8 1 23 341 363 341 363 0.99

10 15 5.5e-07 4.5e-05 23.1 0.9 1 23 369 391 369 391 0.98

11 15 6.6e-05 0.0054 16.5 1.7 1 23 398 420 398 420 0.99

12 15 8.6e-06 0.00071 19.3 2.1 1 23 426 448 426 448 0.98

13 15 0.00019 0.016 15.1 0.3 1 20 454 473 454 476 0.93

14 15 5.3e-06 0.00044 20.0 1.1 2 23 483 504 482 504 0.97

15 15 9.5e-07 7.9e-05 22.3 1.4 1 23 510 533 510 533 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	5.1e-05	0.0042	16.9	0.2	3	23	114	134	113	134	0.97
2	15	1e-06	8.3e-05	22.3	1.2	1	23	140	162	140	162	0.99
3	15	9.7e-06	0.0008	19.2	2.8	1	23	168	190	168	190	0.98
4	15	0.00011	0.0093	15.8	3.6	1	23	196	218	196	218	0.98
5	15	6.6e-06	0.00055	19.7	2.2	1	23	228	250	228	250	0.99
6	15	1.5e-06	0.00012	21.7	1.3	1	23	256	278	256	278	0.98
7	15	1e-05	0.00087	19.0	0.1	1	23	285	307	285	307	0.99
8	15	8e-06	0.00067	19.4	1.1	1	23	313	335	313	335	0.97
9	15	3.3e-05	0.0027	17.5	0.8	1	23	341	363	341	363	0.99
10	15	5.5e-07	4.5e-05	23.1	0.9	1	23	369	391	369	391	0.98
11	15	6.6e-05	0.0054	16.5	1.7	1	23	398	420	398	420	0.99
12	15	8.6e-06	0.00071	19.3	2.1	1	23	426	448	426	448	0.98
13	15	0.00019	0.016	15.1	0.3	1	20	454	473	454	476	0.93
14	15	5.3e-06	0.00044	20.0	1.1	2	23	483	504	482	504	0.97
15	15	9.5e-07	7.9e-05	22.3	1.4	1	23	510	533	510	533	0.97

Sequence Information

Coding Sequence: ATGCCCGTTGTGCCCCCAACAAGTGATTTACTTGCAACGATTAGTATGTTTgagcaacaaataaaatcagaacCGATGGGTTTTTATACAGCATGTCAACCACCACTACCGCCACAAATGGCATCGTTACCATCACGTTCTGTTGAAAATTCAACTGGCGATAGTGGTGGCAGTAATCAACAACAGCCACCCCAGCAGCAACAGCAAACGAATCAATCGGCAACTGAAGTTGCAAAACCAGAAATGGTACAATCAACAGCAAATCATCCCGGTGTTTCGATAGGTGCACCACAAACGGGTGGTACTACTAGCGGACATTCGCGTAGTAAACCTCAAGCATGTAAAGTTTGCGGAAAAATGTTATCGTCGGCTAGTAGTTATTATGTTCATATGAAATTGCATTCGGGAACGAAACCATTTCAATGCACAgTGTGTGAGGCTGCATTCTGTCGCAAACCATATCTGGAAGTACACATGAGAACGCATACAGGAGAACGTCCGTTTCAGTGTGATTTATGTATGAAACGATTTAGTCAGAAGTCATCATTAAATACCCATAAACGGATCCATACGGGCGAACGACCGTTCCAGTGCGTCACCTGCCTGAAGACGTTTACACAGAAATGTGCACTTACGTTGCATACGCGAATTCATACTGGTTATTGGAGCATGCATAAACCGTTCCAGTGTACTCAATGTAATGCTGCATTTTGCCGGAAGCCTTATCTTGACATCCATATGAGAACACATACGGGAGAACGCCCGTTTGAATGTGATGTCTGTTTAAAACGATTCTCACAAAAATCTACACTTAATATACATAAACGCATTCATACTGtCCAGGATCGGCCATACCAGTGTGATCAATGTCCAGCTGCATTTTCGCGTAAACCATATTTAGATATCCACTTGAGAATCCATACAGGCGAACGTCCGTTTGAGTGTGATGTCTGTTTGAAACGATTTACACAGAAGTCGTCATTAAACATCCATAAGACGATACATACTGGTAATCGACCATTCCAATGTGACCTTTGTCCGGCTGCATTCTGTAGGAAACCATACCTCGATATTCATCAGCGTTCGCATACTGGAGAGCGTCCATTTGAATGTGATATTTGTTCGAAAAGATTTGCACAGCGATCAACATTAAACATTCATAAGCGCATTCATACAGTGCAAGGACGACCATATCAGTGTCTGCATTGTCCAGCGGCGTTTTGTCGTAAACCATACCTTGACATCCATCTTAGAATTCATACCGGTGAACGTCCGTTCCAATGTGAACTCTGTATGAAACGGTTTACACAAAAATCatctttaaatattcataaacgAATCCATACAGGTGAACGACCTTATGCTTGTGATATCTGCAACAAGACATTTGCTGTTAAGAGTTATGTGACAGCTCACAgATGGTCTCATGTGTCCGAGAAACCATTAAGCTGTGATCGATGTTCGATGACTTTTACAAGTAAATCACAATTTGCAATTCATATTAGAACACATTCAGCTGGACAAAACTATGAATGTAATGTTTGTGGACGTACTTTTATTCGAGATAGTTATTTAATTAGgcaTCATAATAGAGTGCATCGTGATAATCGTACAACTGCAAACAGTTTAGCAACTATAAATAGTGTTGCAACGGGTCAAGCGCACAGTACAAATGCAACGGCATCAAATGCATCAGCTGAATCAAGTGGTACTGATGTGTACGATGCAACAACTACTAATACGTCTCAGGTTTGTATCCTCCGGCCTGCCGCTCAACAACCATCTAATATTGATCAATACCATATTGCTAGAAGTATCGCGAATGTTATTGCTGGTAGTCGTGGAACTGTTGTCCGTCGGTGA
Protein Sequence: MPVVPPTSDLLATISMFEQQIKSEPMGFYTACQPPLPPQMASLPSRSVENSTGDSGGSNQQQPPQQQQQTNQSATEVAKPEMVQSTANHPGVSIGAPQTGGTTSGHSRSKPQACKVCGKMLSSASSYYVHMKLHSGTKPFQCTVCEAAFCRKPYLEVHMRTHTGERPFQCDLCMKRFSQKSSLNTHKRIHTGERPFQCVTCLKTFTQKCALTLHTRIHTGYWSMHKPFQCTQCNAAFCRKPYLDIHMRTHTGERPFECDVCLKRFSQKSTLNIHKRIHTVQDRPYQCDQCPAAFSRKPYLDIHLRIHTGERPFECDVCLKRFTQKSSLNIHKTIHTGNRPFQCDLCPAAFCRKPYLDIHQRSHTGERPFECDICSKRFAQRSTLNIHKRIHTVQGRPYQCLHCPAAFCRKPYLDIHLRIHTGERPFQCELCMKRFTQKSSLNIHKRIHTGERPYACDICNKTFAVKSYVTAHRWSHVSEKPLSCDRCSMTFTSKSQFAIHIRTHSAGQNYECNVCGRTFIRDSYLIRHHNRVHRDNRTTANSLATINSVATGQAHSTNATASNASAESSGTDVYDATTTNTSQVCILRPAAQQPSNIDQYHIARSIANVIAGSRGTVVRR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -