Cfuc005958.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- -
- Assembly
- GCA_001014335.1
- Location
- JXOR01000890.1:33904-38326[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.7e-05 0.0014 18.4 0.9 2 23 299 320 299 320 0.96 2 18 0.00021 0.017 15.0 0.1 1 23 326 348 326 348 0.96 3 18 8e-05 0.0066 16.3 2.0 1 23 354 376 354 376 0.98 4 18 2.4e-06 0.0002 21.1 2.9 3 23 384 404 382 404 0.98 5 18 2.1e-05 0.0017 18.1 5.7 1 23 410 432 410 432 0.98 6 18 3.5e-06 0.00029 20.5 4.6 1 23 438 460 438 460 0.98 7 18 3e-06 0.00025 20.7 5.6 1 23 466 488 466 488 0.98 8 18 9.2e-08 7.6e-06 25.5 1.8 1 23 494 516 494 516 0.97 9 18 3.9e-06 0.00033 20.4 5.4 1 23 522 544 522 544 0.97 10 18 1.1e-07 9.5e-06 25.2 5.5 1 23 550 572 550 572 0.98 11 18 3.1e-07 2.6e-05 23.8 1.9 1 23 578 600 578 600 0.98 12 18 0.00021 0.018 14.9 8.7 1 23 606 628 606 628 0.97 13 18 5.2e-08 4.3e-06 26.3 4.6 1 23 634 656 634 656 0.98 14 18 5e-06 0.00041 20.1 10.3 1 23 662 684 662 684 0.98 15 18 2.4e-07 2e-05 24.2 2.4 2 23 691 713 690 713 0.95 16 18 2.6e-05 0.0022 17.8 0.3 1 23 719 741 719 741 0.98 17 18 2.2e-06 0.00018 21.2 1.6 1 23 750 772 750 772 0.98 18 18 0.00013 0.011 15.6 0.3 1 23 778 801 778 801 0.97
Sequence Information
- Coding Sequence
- atgttttcatataagCCCCGAGTGGGCAATCAAAGTGCCACCAACTCGGAGATAAATAATCAACCAGTGAAGAGAAATATTGTATTCGTTTCGTCTGGTTCCACTTCATCCGAGATTTTCAGATCGTCTGCTACGAACACAAATACTTCCattGGAAAGTATATGGTTGTCACTAATATGTATAACGACCAACCAGACATTTACTCAAACAGGTtggataaaaattcaataatccaGACCATTGAACCATCTCCTTTAATGACAAATGAAGAAGAAGAACATTTATCTGTGGTTACTATAAACCCAAATACATCATCTGTACCCACTTCAGTTATAGAAACCACAAATGTAGGTTTACACCAATCGAACAGTGAGAATACTAGAAATATTCTGTTGCAAGTAGACGATCGTGGTGTAATAAATACGAGCCGCAAtcttaaaataatatcaaacaaGGATAACATATCGAATAATGTTGGTCACATACAAACAATTCGATTAAATGATGGCAGTGCGTTAGGAGCAACTCCGCATATCAAAGGAACATTGAACAAGAAGGTGATTTTAACACCGCACATTATGTCACCAGAAgtgaataatacaaataacCAAATCATAACGATTCGTGGAGCTGAAGGTCAAGTATTTAAGATCGATATACCTGATAATGAGAGTAATAAAGGACCGGAGTCAATGTACAAGttgaatgttGATGATGTTAATCAATTCTTCACATATCATGAGGTATTTGGTAAGCTGTCAAATGAATCAGGATCATCGACAGCTCCATCAACTATTATTATGAATCCAAATGATTCactaaaaactaaaaacgAAGTTGATGTAGAAGAAATTATAATCAGTGATGCAATGAGTCCAGCGAATGGTGATAATAGTTGTAATATTTGTGgcaaaacatttcaatatagATATCAACTAATCGTACATAAGCAATATCATGCTGAAAGAAAACCATTCGCATGTCAAGTATGCGGTCAagcatttaattcattaaatgaattaactgACCATGGAAAAAATCATGCTAGCTCTAATATGTTTATGTGTACATTGTGTTATCATGTATTCGCGAATGATGAAAGCCTTGAACGTCATATGAAACGGCATGCAACTGATAAGAAATTCGGTTGCACAATCTGTACTCGAACATTCGCACGAAAGGAACATTTACAGAATCATCTGAGAAGTCATACGGGAGAAAGCCCATTCCGGTGTCAGTACTGTTCTAAATCATTTACTCGCAAAGAACATATGGTGAGTCATGAACGAAAACATACAGGCGATACACCATATCGTTGTGAATTATgcaataaatcatttacaagAAAGGAACATTATCAAAACCATTATATGTGGCATACAGGTCAAACACCTCATCGATGTACAATATGTGGGAAGAAATATACTAGAAAGGAACATTTGGATAATCATTTGCGATCTCATAATAATGATACACCATTCCGTTGTGAGATATGTGGTAAAGCATTCACACGAAAGGAACATTTTACGAATCACATTTTATGGCATACCGGAGAGACCCCGCATCGATGCGATATCTGTTCTAAAACGTTTACGCGTAAAGAACATTTGCTAAATCATGTGCGACAACACACTGGCGAGTCTCCACATCGGTGTTCCTATTGTGGTAAAACATTCACCCGCAAAGAACATCTTGCAAACCATATACGCCAACATACCGGCGAAACACCCTTCAAATGTGAAATGTGTCCAAAAGCATTCACTAGACGGGATCATTTAGTGAATCATGTGCGACAACATACTGGTGAGTCGCCACATAAATGTGTTTATTGCGAAAAAACGTTTACTCGTAAAGAGCATTTGGTGAATCACACCCATAAACACACTGGTACATCGCCACATCGATGTCCATATTGTAATAAAGTATTTACACGTAAAGAGCATCTAAATAATCATATCATGATGCATACCGGCGAATCACCGcataaatgtgaatattgtaataaatcatttacaagAAAAGAACACTTGTTCAATCATATGAAACATCATTCTGGTGATAACCTTCTTGTTTGTACCATTTGCAATAAGTCATTTACTAGAAAGGATCATTTAGTGACTCATATGTCtcGAATGCATAATGGAAACAAACCATTTGAATGTGAAGAATGCGGAAAATCATTTCCACTAAGAGGAAATTTACTATTTCATCAACGTAGTCACAACAAAGATTCAACAGATCGACcatttcaatgtgaaataTGTCAGAAAAATTTCGTAACAAAAGGTCACTTAGTGTCTCACACAAGAGCGCATTCAAGAGAACGGAGTTTTATGTGTGATATGTGTCCAAAAGCATTTTTAGGCAAAGGAAATTTAATTCGTCACGTGCGTAAATATCATCCAGATCCAGATCCTTTGACTATAGTTCACACAACAGAGAATCGTGGTACATATAATGGATCAGTATCAACCATACAACATACAACGTCTTTGACCTCCGCATCAACTGGATCTCAATTAACTAATATAACACAGGGCGTTCGTACTGTTCCTATTACAATAATCAGTACAGATGATAATAGTGAAACAGTTGAGTTGGAGGCAACTGACCAATTATTTGTTgatcatattcaatga
- Protein Sequence
- MFSYKPRVGNQSATNSEINNQPVKRNIVFVSSGSTSSEIFRSSATNTNTSIGKYMVVTNMYNDQPDIYSNRLDKNSIIQTIEPSPLMTNEEEEHLSVVTINPNTSSVPTSVIETTNVGLHQSNSENTRNILLQVDDRGVINTSRNLKIISNKDNISNNVGHIQTIRLNDGSALGATPHIKGTLNKKVILTPHIMSPEVNNTNNQIITIRGAEGQVFKIDIPDNESNKGPESMYKLNVDDVNQFFTYHEVFGKLSNESGSSTAPSTIIMNPNDSLKTKNEVDVEEIIISDAMSPANGDNSCNICGKTFQYRYQLIVHKQYHAERKPFACQVCGQAFNSLNELTDHGKNHASSNMFMCTLCYHVFANDESLERHMKRHATDKKFGCTICTRTFARKEHLQNHLRSHTGESPFRCQYCSKSFTRKEHMVSHERKHTGDTPYRCELCNKSFTRKEHYQNHYMWHTGQTPHRCTICGKKYTRKEHLDNHLRSHNNDTPFRCEICGKAFTRKEHFTNHILWHTGETPHRCDICSKTFTRKEHLLNHVRQHTGESPHRCSYCGKTFTRKEHLANHIRQHTGETPFKCEMCPKAFTRRDHLVNHVRQHTGESPHKCVYCEKTFTRKEHLVNHTHKHTGTSPHRCPYCNKVFTRKEHLNNHIMMHTGESPHKCEYCNKSFTRKEHLFNHMKHHSGDNLLVCTICNKSFTRKDHLVTHMSRMHNGNKPFECEECGKSFPLRGNLLFHQRSHNKDSTDRPFQCEICQKNFVTKGHLVSHTRAHSRERSFMCDMCPKAFLGKGNLIRHVRKYHPDPDPLTIVHTTENRGTYNGSVSTIQHTTSLTSASTGSQLTNITQGVRTVPITIISTDDNSETVELEATDQLFVDHIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -