Cfuc010948.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- cheC
- Assembly
- GCA_001014335.1
- Location
- JXOR01000073.1:147494-150134[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3e-06 0.0039 16.3 0.0 4 35 11 44 8 52 0.84 2 3 1.9e-06 0.0022 17.1 0.0 1 35 59 95 59 103 0.90 3 3 3.6 4.2e+03 -3.0 0.0 9 21 429 441 429 441 0.86
Sequence Information
- Coding Sequence
- ATGgcAAAGAAATGTAACTATACGGAAGTTGATCTACAATTGGCATTAGCTAAATTGCAAGCAAACCCTTCTGCTTCAAGAAGAAAACTGGCACGAGAATTCAATGTTCCTGAATCAACATTACGCCATCGGTCAACCAATCCAACAATTTCTCTAgCAAAGAAACGTAACTATACTGAAGATGATCTACAATTGGCATTGGCCAAATTACGAGAGAATCCTTCTGCTTCAAGAAGAAAACTGGCACGGGAATTCAATGTTCCTGAAGCAACATTACGCCATCGGTCAACCAATCCAATAATTTCTTCTAGGAGAGGACCAGCACCTCTACTAAGTATAGACCAGGAACAACGGTTGGCCGATTGGATAATTGACTCAGCGAACAGGGGTTTCCCACTTAGAAGAGACAATGTCAGAGAGGCCGCTGTAAAAATGCTAAAAGGTAAAGAGCTATGCTCTTCGTGGATGAAAAGATTCCTTAACCGACATCCAGAAATTACAAAAAGAGTTCCCAAATATTTATCGTTGGTTCACACTAAGCTGACAGAAAATGACATTCGATCCTGGTTTCACACAATCGGAGAaTATATCAAGAGACACGATTATTCAGAGGTACTAGAGGATGGATCACGAATCTTTAATTGCGATGAAAGTGAATTCTCTCTGTCTGAAAATATTCCAGATCTTGCCACTAAGGGACAAAAAAATATCACAGTATTGATGACCGTATCGGCCAATGGAGAAATCGTGCCTCCGATGATCATATATCCTTTTGAAAGATTTCCAAAGAACATCAAGACCAGTGTTCCTTCTGATTGGGCAATAGCGAATACTAAAAATGCATCAACTAAAAAGGATATATTTAGTGATTACATCACTAAagtatttgataaatatttaaatgataacaaaatCAAACGGCCAGTTATCTTATATGTTGACGGCCATTCGTCTTATTTAAGCCCGGATTTAAGCAATATCTGCAAAGAACTTGaaattatcattattgcGTTATACTCTAACGCGACACACATAATGCAACATGCCGATGGATCAGTTTTCAAATGCCTTAAGAATGGTTGGGAGAATAGATTCCATGACTGGCGTTTGTATAATTGTTGCAAATGTAAATTTCCTCTATCGGAATTTGCACCATTACTAAAATGTATTATTGATGAGTTTTTAACTCCCTTAATTATTCTCAACGGGTTTAGAGCTTGCGGTCTTTTCCCTTGGAATCAGAACGCAGTCGATTACTCTCAATGTATTACAAGCGGTAATTCAATTGAGTCAGTAACTAGCGgtatgatttcatttgaaaagtTTAAATACATTTGTGGTAACGCTTTGTTATCCAAATTGGACAATGGAACCGAGATAACGGGAGATGAATGCATTAATGCGTTAAAAGCTGTGTATGAGGCATTTAAGGATTCGACAGACAATTTGGGTGTATCTCAAACGACTGTTTATATTgacgaaattgaaataattgattCGAGAGATAATTTTGTATACACCGAACCTGTTCTAATGTCAACTAATTCATCGTCATCAGAGTTAAGTGAAACATGTTACGAATCATCACAACACCGCCGAAGAGACGAAAATGAATCTGATCATTCAAATCCAGAGAGAAGTAATGGACCACAAAATCTCGATGAGACGGATTACCATGAGGAATTGAAATACATCCAGGATAGCGTGGTTTCCAACTACGAGGAAGAGCtaactgaaaatgaatga
- Protein Sequence
- MAKKCNYTEVDLQLALAKLQANPSASRRKLAREFNVPESTLRHRSTNPTISLAKKRNYTEDDLQLALAKLRENPSASRRKLAREFNVPEATLRHRSTNPIISSRRGPAPLLSIDQEQRLADWIIDSANRGFPLRRDNVREAAVKMLKGKELCSSWMKRFLNRHPEITKRVPKYLSLVHTKLTENDIRSWFHTIGEYIKRHDYSEVLEDGSRIFNCDESEFSLSENIPDLATKGQKNITVLMTVSANGEIVPPMIIYPFERFPKNIKTSVPSDWAIANTKNASTKKDIFSDYITKVFDKYLNDNKIKRPVILYVDGHSSYLSPDLSNICKELEIIIIALYSNATHIMQHADGSVFKCLKNGWENRFHDWRLYNCCKCKFPLSEFAPLLKCIIDEFLTPLIILNGFRACGLFPWNQNAVDYSQCITSGNSIESVTSGMISFEKFKYICGNALLSKLDNGTEITGDECINALKAVYEAFKDSTDNLGVSQTTVYIDEIEIIDSRDNFVYTEPVLMSTNSSSSELSETCYESSQHRRRDENESDHSNPERSNGPQNLDETDYHEELKYIQDSVVSNYEEELTENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -