Cfuc006457.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- bab1
- Assembly
- GCA_001014335.1
- Location
- JXOR01000156.1:31638-36755[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.57 6.7e+02 -0.5 0.0 32 42 255 266 251 269 0.81 2 2 2.7e-15 3.2e-12 45.4 0.0 2 43 416 458 415 460 0.94
Sequence Information
- Coding Sequence
- ATGTATGAAAGTCAAATGTCTATGGTGCATAATAAAACACCACCGCCACAAAATTTATCAACAACTGATACAAAACCATCATCACCTTatcataataacaataatagtAATCAAAATGCTAACATGATGGGTGGCAATCAACAATCAATTGCATCATCGTCATCAccaacaacatcatcatcaatgcATCACCAACAAACACATCAACaccagcagcagcagcagcaacagcaacaacagcaTCAATTGAATAGTGGGCCACAACAATTCTGTTTACGTTGGAATAACTATCaaacaaatttaacaaatGTATTTGATCAATTACTtcaaaatgaatcatttgtgGACGTTACCTTAGCATGCGATGGTAATTCATTGAAAGCACATAAAATGGTATTGTCCGCATGCAGTCCTTACTTCCAAGGTTTACTATATGAAAATCCATGTCAGCAtccaattattataatgaaagatGTTAAATGGTCAGAAATGAAAgcaattgttgaatttatgtataaagGTGAAATAAATGTGCGACAAGATCAAATTGGTCCATTACTAAAAGTAGCCGATATGCTTAAGATACGCGGTTTAACGGATGTGAATGCTGATAATGAATTCCAACGGTCTAGTAGCTCACCATTAGAACATAACGTGTCTGTTGTAACACCACCcgaattattaatgaataaaaaaccaaaaatcaatGTTAAAGATTGGGGTGAAATGAGTAGTTTAAGTACCACTGTTGGTATCAGTGCATCACTAAGTCATAATCGTAAACGACGACATCCATCAAATGGTAATAGTAGTCCAACCAGTTATGATACATCGCCATCAATTCAacatgaatcaattgaaacatcATCACCGTCACCATTAATTGGTAATCGTTTAGCTTCCTTAATACCGTCTGTTGTGGCAACACCGACACCACCGTCTTCATTACAGACACCCGCATTTTCTATACCGTTACCAATGGATCCATTGGGTTTAACAGCCCTCCATAATATGTCTCAGGGATCTGATGATTTGGAAATTAAGCCAGGCATTGCTGAAATGATTCGTGAAGAAGAACGTGCAAAACTTCTTGAAAGCTCACAAAATTGGTTAGGAGCATCGACCAGTACCATAAACGATAGTTATCAGATGCAGCTACAATCAATGTGGCAAAAATGTTGGAATCGTAATCAGAATTTGGCACAGATACCATTTCGTGAACGTGGCCCATTAAAATCATGGCGTCCACAAGCAATGGCTGATGCCATATTTAGTGTATTAAAAGATGGACTGTCATTGTCTCAGGCAGCCAGAAAATATGACATTCCATATCCAACATTTGTGTTGTATGCTAATCGTGTACATAATATGTTGGGaccatcaattgaatgtgaacCAGATTTACGGCCAAAGGGTAGAGGTAGACCTCAACGTATATTACTTGGTTTATGGCCCGATGAACACATTAAAGGTGTTATTAAGACTGTTGTATTTCGTGATGGTTTAGATATTAAGGAAGAGATAATGCATTATGGATACGATGGACATCATCCAATGTTTCCATTCCATGAGAGCGCATTAAAACGACCGTTAAGACCACAATCGAACGGTATATTAGAGGCATCCGGTTCATTAAGTATTTCAAGTAGCacaaattcaatacaaatatcGCCAAATGAATCGTCCACATCACCATCCGTGCAAGAATTGAGGCATCAATTGCAACAGCAACAGTCACACAGTCCGTCAGAGAATCAACCAAGAGGTTAA
- Protein Sequence
- MYESQMSMVHNKTPPPQNLSTTDTKPSSPYHNNNNSNQNANMMGGNQQSIASSSSPTTSSSMHHQQTHQHQQQQQQQQQQHQLNSGPQQFCLRWNNYQTNLTNVFDQLLQNESFVDVTLACDGNSLKAHKMVLSACSPYFQGLLYENPCQHPIIIMKDVKWSEMKAIVEFMYKGEINVRQDQIGPLLKVADMLKIRGLTDVNADNEFQRSSSSPLEHNVSVVTPPELLMNKKPKINVKDWGEMSSLSTTVGISASLSHNRKRRHPSNGNSSPTSYDTSPSIQHESIETSSPSPLIGNRLASLIPSVVATPTPPSSLQTPAFSIPLPMDPLGLTALHNMSQGSDDLEIKPGIAEMIREEERAKLLESSQNWLGASTSTINDSYQMQLQSMWQKCWNRNQNLAQIPFRERGPLKSWRPQAMADAIFSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIECEPDLRPKGRGRPQRILLGLWPDEHIKGVIKTVVFRDGLDIKEEIMHYGYDGHHPMFPFHESALKRPLRPQSNGILEASGSLSISSSTNSIQISPNESSTSPSVQELRHQLQQQQSHSPSENQPRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00348279;
- 90% Identity
- iTF_00348279;
- 80% Identity
- iTF_00348279;