Cfuc000958.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- lov
- Assembly
- GCA_001014335.1
- Location
- JXOR01000279.1:101615-108175[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.7e-18 9e-15 53.5 0.0 1 44 531 574 531 575 0.96
Sequence Information
- Coding Sequence
- ATGACATCACAAGAACACTACAGCCTACGGTGGAACAATCACCAAAATCATATACTTGATGcatttgattcattgttaAGAACTAAATCGTTGGTTGATGTGACATTGGTTTGCTCAGAAAAAAGTATTTATGCCCATAAAGTGGTACTGTCTGCCTGTTCACCATTTTTTAAGCGTGTATTTTGTGAGAATCCATGTAAACATCCTGTGATTGTATTAAAAGATTTTAGCAGTTGGGTGGTACAAGCgattgttgaatttatgtatCGTGGTGAAATTAGTGTGCCCCAAAGAAAATTACGTGCAATAATTGATGCTGGTGAATCATTACAAGTACGCGGTTTAGTTGATCATCCGGTATCAATAAGTACACCAACGCCAGCAGCAACACCAGATGATTATGATGATCTTATggataattcattattatcaagTGAAACACCGGAACCAGCTGGTGGTGGTGACTATGATAACAGACATTTAattgaaccaaataataaaataccattgcCCACATCACAATTATATTTAGATGGTAATGGTAATAATACAACGGCCGGAACAAGTAATGGACCAACAAATAATGGTACAACAAATGAACTATGCACTTCACCGTTGCCCCGAAGAAAACAGGCAAGGCCAAGACGCCGTTCAGGTGAAGGTGGACCACATGATTTAAGTCAAAATAAAACACCCGATGATAATGAGAAATCAGATAGTGAATGTGATGAGGAGATCATCACTAAAGACGATGAAttaaaacatagaaaaaacTCAGATCGTGATATTGTGCAACGTAGGCCTAAGGAATCCGAATCAAGTGCAATAGATGAAGATGTCGGTGAACAACACAATAATGATGACGATGAATTAATGCTAGAAAATGATGAAGGACCAGAAAATTTATGTACGAAAAAATCAATTGGCCCagataatgataataataatagtgaGTGTTTgagtaataataatacaaatgataaaacaaaacgTATTGTACTCTCGATGAAAGATATTCGGCATATTAATAAACCAACATCCgtgaatcaaaataatcaCCATCAACCGCATCcagattatttaaatcatttaaatagtCATGCATTATTTATGCAATCGGCAGATGCATTAAAACGTGAGGCCTTGGAACATCAACGTAATTTAGATAATGAGAGTCCTTTTATGGAACAAATGGATTTATCAATGTCTGGTGCCCATCAGCCGCATTCATCACAACATGATTTAGAGCAACGGGCCAATATGCATAAAGAATTTACGCCTAGTTCACCGATGAGTTTACCATCACATTTTAATCCACCGGATGGTCCACCACATCCACCGTCACCATTACAATTTCCATCAATGGCATCGGCATTAGCATTAACACCGCCACATATGTTTGGCTTAGAATCATCATTGGGTCTATTTCCACCTGGTATGGATCCAGGTAAACTGTATAATCCGTTAATGGAAATGTCGGATCCAAGAGGTTTACATCCCGATCATCATCCGCCAccatttttaaaaaagaaatTGAGTCGTGCTAAGGGCCAACATTCAGCGCCAAGGGGTGGCCCGCCACGTTCATGGACAAATGCTGAACTAACTGAAGCTCTATCACAcgtatggaataaaaaaatgacaACAAGTCAAGCATCTCGGATCTTTGGTATaccatataattcattattaatgtaTGTACGTGGTAAATATggtaaaagtttaaaattagaACAATTACGAAAGGATTGTATTAGTGGGCCACctgttgaattaattacaatggGAATTAGTGGTGCTCGTGCAGCAACACGTGCAATTCAAGAATCTGGTAAAAATCGTCACAGTGATTTAAGGAACAGTAGTGATATGAAAGATATTGGTGATAATATACCATTACCGCGTAGTTCATCATCTGAACCAGATTTAATGTCAAGTCCAAATGCAATGTTTAATCCATTCCCACCTGGTTTTTATCCAGACTTTGCTGGTGGTTTTCCTGGTTTACCATTAAGTATGTTAAACTTATTGCCACCGGATCGGCATCAACAAGCATTACATATGGGTATTGATGAAGACTGTAAAAGTGATCGTTCAAAGCATTCATTAGATGATGATTATCCCAGTCAACCGTTAGCATTAAATCGTGATGAGCGACGTGAAATATGTCAACAGAATGGTCAAGATTGA
- Protein Sequence
- MTSQEHYSLRWNNHQNHILDAFDSLLRTKSLVDVTLVCSEKSIYAHKVVLSACSPFFKRVFCENPCKHPVIVLKDFSSWVVQAIVEFMYRGEISVPQRKLRAIIDAGESLQVRGLVDHPVSISTPTPAATPDDYDDLMDNSLLSSETPEPAGGGDYDNRHLIEPNNKIPLPTSQLYLDGNGNNTTAGTSNGPTNNGTTNELCTSPLPRRKQARPRRRSGEGGPHDLSQNKTPDDNEKSDSECDEEIITKDDELKHRKNSDRDIVQRRPKESESSAIDEDVGEQHNNDDDELMLENDEGPENLCTKKSIGPDNDNNNSECLSNNNTNDKTKRIVLSMKDIRHINKPTSVNQNNHHQPHPDYLNHLNSHALFMQSADALKREALEHQRNLDNESPFMEQMDLSMSGAHQPHSSQHDLEQRANMHKEFTPSSPMSLPSHFNPPDGPPHPPSPLQFPSMASALALTPPHMFGLESSLGLFPPGMDPGKLYNPLMEMSDPRGLHPDHHPPPFLKKKLSRAKGQHSAPRGGPPRSWTNAELTEALSHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPVELITMGISGARAATRAIQESGKNRHSDLRNSSDMKDIGDNIPLPRSSSSEPDLMSSPNAMFNPFPPGFYPDFAGGFPGLPLSMLNLLPPDRHQQALHMGIDEDCKSDRSKHSLDDDYPSQPLALNRDERREICQQNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00348290;
- 90% Identity
- iTF_00348290;
- 80% Identity
- iTF_00348290;