Cfuc009702.1
Basic Information
- Insect
- Coboldia fuscipes
- Gene Symbol
- bab2
- Assembly
- GCA_001014335.1
- Location
- JXOR01000099.1:143977-177233[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-11 1.2e-08 33.9 0.0 1 39 426 465 426 469 0.90 2 4 6.6e-14 7.8e-11 40.9 0.1 1 39 480 518 480 521 0.94 3 4 2.1e-17 2.5e-14 52.1 0.0 1 45 535 580 535 580 0.97 4 4 1.4e-18 1.7e-15 55.9 0.1 1 43 587 630 587 632 0.96
Sequence Information
- Coding Sequence
- ATGGATGACGAGGTTGGTAGTGTTAGTCCGGCTGAAGAGCATttacaattatattgtttGCGGTGGAGTAACTATCAGAATAATATAACAACGGTGTTTCAAGAGTTGCTAGAGAACCAAAGTTTTGTTGATGTCACATTAGCATGTACGGATCACACAGTCAAGGCACACAAGATAATCCTGTCGGCATTCTCCAGCTATTTCAAAAAAGTATTGCTGGAAAATCCTTGTGATCATCCCACTATAATATTACCGGCTCAGATTCAGTACACTGATTTGACTGCAATCATTGAATTCTTGTACAAAGGTGAAATGGATGTTACCGAAGATGAACTTCAAagTGTTTTACGTACAGCCGAGATATTGCGTATCAAAGGATTGTGTGACATTAATGAAACGAATAGTGAAAAAGATTTATCAAAAAAACGGCGACAATCATCCGTAGGTTCTGAACAGGAAATTTTATCAACTACACCACCTGAATATCATCAGTCACCGACACGACACAAGAGGACTaaactaaaaccaaaaaaatcaAGAGTACCAACAAATCGTTTACCTGTACAATACGGTGAAGAAGAATCTGATCTATCAGATAATGGTaattcatacataatattggagaagaaattattgtcagccaaacataaaaaaacaaaaaatatggcCAGTCTTGGTATGGGAATGaatggTGTCCTGATGGGTGTACCACTCGGAGGTTATTTGGATTTTGCACCAGAACCGCCAGCACCATCTGCGACCCCTGTATCAGTTACAGAACATGTTGACTTACAATGCCCACCGAGTAATGATACCAGAGACTTATCAAATATTTGTGTTTTAGATTCAACGCCAAATGGTGAGGTCCgtattaaatttgaaacattACGTTCATTGGCACCATCCGatggtttaaatttaaataatcatcacATGTCATTACACACAATACATCAATTGGATCCAGTACAATCGTCAATTGAACAGCATAATAATAGCATATCATCATCACGTAATTCAATAAGTAATTCCATTGACaataaatcaacaaatgaTGATCAGGATCATCAAATGATTGATGATGATCAAACTGTTGCTATTAAACAAGAATCAAATTCacaaaatatgataattacacctgaaattgtttcattaatgAGTTCAACTCAAATGGATATTTATGGTTCCGATACGAGTGAggatacaaaaatatttgccAACAACGATTCACCAACAAATCAACAATCTGATGCTGCTAAAGTACCGAAAACTTGGACACAAGAGGATATGGAATCAGCATTGGATGCACTtagaaatcataatatgaGTTTAACAAAAGCATCAATTACATTTGGTATACCGTCCACAACACTATGGCAACGTGCTCATCGATTAGGTATTGATACACCGAAAAAGGAGGGACCGACTAAAACGTGGAGTGAAGATTCGTTAAACAGCGCTTTGGAAGCATTACGTACGGGTCAAATATCAGCAAATAAAGCTTCGAAAGCATATGGAATTCCATCATCAACGTTGTACAAAATTGCACGCCGTGAAGGTATAAGACTGGCAGCACCATTTAATGCAGCGCCAACAACCTGGACTCAAGAAGATTTGGAACGGGCACTTGAAGCAATCCGTGCTGGTCATACATCTGTTCAAAAGGCTAGCACAGAATTTGGAATACCAACGGGTACACTTTACGGTCGATGTAAACGTGAAGGAATTGAATTATCTCGTTCGAATCCAACACCTTGGTCTGAAGACGCAATGATGGATGCCTTAGAATCAGTTAGAGTTGGTCAGATGTCCATCAATCAAGCAgctattcattataatttgcCGTATAGTTCATTGTATGGACGTTTTAAAAGGGGTAAATATGAAGCTGGTAGTGTTGATAACATGAATTCATCTCAATTGGATCAAAGTCCAGATAATTCgcgTAACTTCCAATATAGTCCAACTGGGCCAGCAACAATTCAACATCAAATCCATCCAACTCATCAATCAATTGTTGTTACATCACCGTCACTGTtgcatcatcatcaacagcaacagcatCCATCaaatcatcataatattatgtatcaTCATGTACAGACTTTGCATCCGTCGATGCAACATGAAAGAAGTTGA
- Protein Sequence
- MDDEVGSVSPAEEHLQLYCLRWSNYQNNITTVFQELLENQSFVDVTLACTDHTVKAHKIILSAFSSYFKKVLLENPCDHPTIILPAQIQYTDLTAIIEFLYKGEMDVTEDELQSVLRTAEILRIKGLCDINETNSEKDLSKKRRQSSVGSEQEILSTTPPEYHQSPTRHKRTKLKPKKSRVPTNRLPVQYGEEESDLSDNGNSYIILEKKLLSAKHKKTKNMASLGMGMNGVLMGVPLGGYLDFAPEPPAPSATPVSVTEHVDLQCPPSNDTRDLSNICVLDSTPNGEVRIKFETLRSLAPSDGLNLNNHHMSLHTIHQLDPVQSSIEQHNNSISSSRNSISNSIDNKSTNDDQDHQMIDDDQTVAIKQESNSQNMIITPEIVSLMSSTQMDIYGSDTSEDTKIFANNDSPTNQQSDAAKVPKTWTQEDMESALDALRNHNMSLTKASITFGIPSTTLWQRAHRLGIDTPKKEGPTKTWSEDSLNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMDALESVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEAGSVDNMNSSQLDQSPDNSRNFQYSPTGPATIQHQIHPTHQSIVVTSPSLLHHHQQQQHPSNHHNIMYHHVQTLHPSMQHERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00348291;
- 90% Identity
- iTF_00348291;
- 80% Identity
- iTF_00348291;