Cmed154450.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- stc
- Assembly
- GCA_014851415.1
- Location
- Chr16:2027084-2028759[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.8e-05 0.28 11.1 10.1 1 18 3 20 3 21 0.97 2 7 0.031 4.9e+02 0.7 3.0 4 10 18 24 17 24 0.93 3 7 1.6e-07 0.0025 17.6 14.0 3 19 32 48 30 48 0.92 4 7 3.2e-05 0.5 10.3 9.2 10 18 95 103 92 104 0.92 5 7 0.2 3.1e+03 -1.9 0.6 9 11 110 112 108 115 0.71 6 7 0.31 4.8e+03 -2.5 0.8 15 18 130 134 129 135 0.54 7 7 8e-10 1.3e-05 25.0 9.7 1 16 140 155 140 156 0.96
Sequence Information
- Coding Sequence
- ATGTCTTGCGGCCGCCACCGCTGCCGCACCGTGTGCTGCGCGGCCAACTGCCACCGCTGCGCCGTGCTGTGCCAGCGCACGCTGTCCTGCCAGCTGCACCGCTGCGAGGAGTTCTGCCACACCGGCCACTGCGCCCCCTGCCCGCGCGTCAGTTTCGAGGAGTTGCGCTGCTCGTGCGGCGCTCAGGTGGTCCTGCCTCCAGTACGCTGCGGCACGCGCCCGCCGGCCTGCGACGCGGAGTGCCGGCGCGAGAGACCCTGCCGCCACCCGCCGCACCACTCCTGCCACGTGGGCGACTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGCCAGCACGAGGAACGTAAAACAATACCGTGCTCCCAAGAAGAGTTCTCCTGCGGTCTGCCATGCGGCAAGCCGTTGCCGTGTGGCAAGCACACTTGCATCAAGACGTGCCACAAAGGAGAATGCGACACTGGCAAGTGA
- Protein Sequence
- MSCGRHRCRTVCCAANCHRCAVLCQRTLSCQLHRCEEFCHTGHCAPCPRVSFEELRCSCGAQVVLPPVRCGTRPPACDAECRRERPCRHPPHHSCHVGDCPPCVVLTTKRCHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGECDTGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -