Cmed144070.1
Basic Information
- Insect
- Cnaphalocrocis medinalis
- Gene Symbol
- -
- Assembly
- GCA_014851415.1
- Location
- ctg1005:38483-41014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.25 16 6.0 1.9 2 23 113 134 112 134 0.90 2 11 2.1e-05 0.0014 18.8 0.7 1 23 140 163 140 163 0.97 3 11 0.00043 0.028 14.7 4.1 1 23 179 201 179 201 0.99 4 11 0.0007 0.046 14.0 1.0 1 23 206 230 206 230 0.98 5 11 0.1 6.6 7.2 1.5 1 23 239 262 239 262 0.96 6 11 0.79 52 4.4 0.4 2 21 271 290 270 291 0.91 7 11 0.045 2.9 8.3 6.5 1 23 380 402 380 403 0.96 8 11 0.056 3.7 8.0 0.6 1 20 411 430 411 432 0.91 9 11 0.00086 0.056 13.7 6.6 2 23 465 487 464 487 0.94 10 11 0.34 22 5.6 1.5 2 23 493 514 492 514 0.87 11 11 0.00054 0.035 14.4 6.4 1 23 520 543 520 543 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATCCAGGAAATATTGAACGAGAATCACATGAAATTGAAGAAGAAATCTCCAAGGTAGAAATGCTAAGGCAAGATCAAAAGGATATTGACGAAGAATGTCTAATGGAGCGAGAATGTATTAACGTTGAGCGGGAAAAGAATAACGTTCAAGAGGATATGTTGAACATGTTTGCGAGTGTTTGGGTGAAGATCGAGGTAGACGATGATAAAGAGGATGGTAAACCGATGCTGGAGCCGAATCAAAATGGGTGTCTCGAAGATGGCATGAGGATAATTAACAGCACTCAGTTTACAAAACCCAAGAAGCGATACAAGGAGACAAAGATATTAAAATGCCCCCAATGCGATTATACAACTATATACAAAAACTGCTTGAAATTCCACCTAATCGGCCATGGGGACTCCAAACCGTTTTCCTGCACCATCTGCGAATACACCACTAAATATCCAACAGCTTTGAACAGACATATGATGATAAAACACCAAGATACTCAATTGGAAACGCCTGATCCGAAATCCCCACAGATGTATAAGTGCGCTCACTGTGATTACACATCATTCTACAAATGGAATTTGAACGCTCATAAACGGAAACACTTAGCAAAAACATTCAAATGCTCAGTCCCTGATTGTGGATACGAAACTGCGTACAGACATAATTTGGCTAAACATGGCAAGAAACATGATACAGTTGAGAAAAACGTCTTTTACAAGTGTGATAAGTGTCCTTTTATGACGCGTTTTGACGGACACATTTCGAGACATTTGGCGAAAATTCACAATGAAGTCGCAGAAGATATGAGCTCTTGTGACCTTTGTGACTTTTCTACTAAAGTCAGATGGAGATTAAATATACATAAGCAGAGAAGTCGACAGGAGAATCTTTTAAAATGCACTTTTTGCGATTTTGAAACTTACTACAGATGTGAAAGTAAGAAACATAATGTTAGGCATTATAAAGAAATGAATGTTAAAAAAGATAAAGGACAAGAAATCAGTCAGAAAGAACCAGTATTGGATAGTGACAAAGATTTTGATACAGATGAAAAGACACCGAAATATACACTAGATCCAGATTGCTTAGATTGGAATAGCATTCAAGTTCTCGAGTCCGATGATAAGGAAAAACCGTTTCAATGTCACATGTGTAACTATACTGCACGATTTAAGGCTTCCGTGCAGAGACATTTTCAGAGACATCACACAGGCTCAAGAAATAAGCCTTATAAATGCGTTAACTGTGATTTCTCAACGAAAACAAAAGACCAAATTGCTTTACACAACAAGAGAAGCAAATCTGATGTTGTTTTATATTGTAACAGCTGCGATTTTGTAACAAAATTCAAATGTCAGTTTGCAATGCATCAGAAATGTCATTACGATAACAAGTGCCCAAAATGTGATTACACTTGTAAGCACAAATACGAGTTGCAAAAGCATTTTACGATGACGCATTTAGGGGAAGGGCTGAAGTGTCAATACTGTGATTATAAGGCAGCTAGAAAGGATAGCTTACTCTGCCATGAGACGATACACACCGGTATGAAACCGTTCAAATGTGAACATTGTGATTATATGTCTGTTAGGAAATGTCTACTCAATAATCATATGAAGAGGTACCACAGTGAGCATTTGAACGATGTGACAGTTATAAGTGCGGATAAGATAGAATCTTTGAAGATTCCGGTGGAAAATATGGATCTACAGGATCTTGATGGACTGTAG
- Protein Sequence
- MEDPGNIERESHEIEEEISKVEMLRQDQKDIDEECLMERECINVEREKNNVQEDMLNMFASVWVKIEVDDDKEDGKPMLEPNQNGCLEDGMRIINSTQFTKPKKRYKETKILKCPQCDYTTIYKNCLKFHLIGHGDSKPFSCTICEYTTKYPTALNRHMMIKHQDTQLETPDPKSPQMYKCAHCDYTSFYKWNLNAHKRKHLAKTFKCSVPDCGYETAYRHNLAKHGKKHDTVEKNVFYKCDKCPFMTRFDGHISRHLAKIHNEVAEDMSSCDLCDFSTKVRWRLNIHKQRSRQENLLKCTFCDFETYYRCESKKHNVRHYKEMNVKKDKGQEISQKEPVLDSDKDFDTDEKTPKYTLDPDCLDWNSIQVLESDDKEKPFQCHMCNYTARFKASVQRHFQRHHTGSRNKPYKCVNCDFSTKTKDQIALHNKRSKSDVVLYCNSCDFVTKFKCQFAMHQKCHYDNKCPKCDYTCKHKYELQKHFTMTHLGEGLKCQYCDYKAARKDSLLCHETIHTGMKPFKCEHCDYMSVRKCLLNNHMKRYHSEHLNDVTVISADKIESLKIPVENMDLQDLDGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -